Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3478 |
Symbol | pcaC |
ID | 5713709 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 3660856 |
End bp | 3661242 |
Gene Length | 387 bp |
Protein Length | 128 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641269407 |
Product | 4-carboxymuconolactone decarboxylase |
Protein accession | YP_001534812 |
Protein GI | 159046018 |
COG category | [S] Function unknown |
COG ID | [COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit |
TIGRFAM ID | [TIGR02425] 4-carboxymuconolactone decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGACA AGTCACGCTA CGAGATCGGG ATGGAAGTGC GGCGCGCAGT GCTGGGTGAT GCCCATGTGG ACCGGGCCGA AGCGGCGAAG AATCCGTTGG ATGCGCCGTT CCAGTCGCTG ATCACCGAGG CCGCCTGGGG CACCGTCTGG GCCTCCGACG CGATCAGCCG GCGCGAACGC TCCATGCTGA CGCTTGCGCT GCTGGCCGCC ACCGGGAATT TCGACGAGAT TCCGATGCAT GTCCGGGCCT GCGTCAATAC CGGGGCCAGC AAGACCGACG TGATGGAGGT GTTCCAACAC GTGGCGATCT ATGCCGGGGT GCCGCGGGCC AATCACGCGA TCAAACTTGC CAAGGCCACC TTTGCCGAGA TGGAGGCAAG GTCATGA
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Protein sequence | MSDKSRYEIG MEVRRAVLGD AHVDRAEAAK NPLDAPFQSL ITEAAWGTVW ASDAISRRER SMLTLALLAA TGNFDEIPMH VRACVNTGAS KTDVMEVFQH VAIYAGVPRA NHAIKLAKAT FAEMEARS
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