Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3438 |
Symbol | addA |
ID | 5712496 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 3620154 |
End bp | 3623531 |
Gene Length | 3378 bp |
Protein Length | 1125 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641269367 |
Product | double-strand break repair helicase AddA |
Protein accession | YP_001534772 |
Protein GI | 159045978 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGCCC CGGCCCCGAA CGACGCGACG CGCGCGCAGA TCGCCGCTGC GGACCCGACT TCGTCGGTTT GGCTGTCGGC CAATGCGGGC TCGGGCAAGA CCAAGGTTCT CACCGACCGG GTGGCGCGAC TGCTGCTCGA AGACGTACCT CCGGAACGCA TTCTCTGCCT GACCTATACG AAAGCCGCCG CGAGCGAGAT GCAGAACCGG CTCTTCCGCA CGCTCGGAGG TTGGTCGATG CTGGATGATG GCGACCTGCG GCGGCGACTG GCCGAGCTGG GCCTGCTGCA GGTCGAGATC ACGGCAGCGC GTTGCCGCAG CGCCCGCACG CTCTTTGCCC GAGCGATCGA GACCCCGGGC GGACTGAAGA TCCAGACGAT CCACTCCTTC TGCGCCAGCC TTTTGCGCCG TTTTCCGATG GAAGCTGGCG TGTCGCCGCA ATTCACCGAA ATGGACAGTC GCGCCGAGGC CGAGTTGCAA CGGGCTGTGC TGCGCCAGAT GGCCGAGGGA CCGGGTCGCG ACAGCCTCTT TGCCCTCGCG CAGAGCGTGG ACGAGACGAA CTTGCCGGAG CTCATGAAAG AACTTCTGAG CCACCGCGAG GCGCTCACAA GCCCGCCCGC CCAAGGCGTT ATCGAAAAGA CCCTTGGATT GGCTCCAGGG GATAGCATCA CAGCGCTCTC GGACCGCACC TTTCAAGCCA AGGATCGCGA CTTGATCGGG CGTGTCGCGA AAGCCTGCGC CACCGGCAGT TCAACCGATG CCAAAGCCGC GGCAAAGCTG CAAGAACTTG CAGACCGTGC GCCGGATACA ACGTGGTTCG AGGTTCTGGA GGGCTTGCTA CTCTATGGTG CGACGGCCAA GGCCGGCCCT TTCGCGCCCA AGACCGACGC CTTCCCAACG AAAGCCACGC GGACCGCGCT TGGCGCCGAC ATGGGCGCGC TGAACGACCT GATGTGTCGT GTCGCCGAAG CGCGACAGCC TCGTCTGGCG TTGGAAATCG CGGCGCAGAC CCGGATCGTC CACAACTTCG CCAACGTGTT CCTGAAGGCC TACCAGGCGG GCAAGGACGC GCGTGGTTGG TTGGATTTCG ACGATCTGAT CCTGCGCGCC AAGACGCTTC TGACCGATCC GGGGGTGGCG CAATGGGTTC TCTTCCGACT TGATGGCGGG ATCGACCATA TGCTGGTGGA CGAAGCGCAG GACACCTCGC CCGTGCAATG GGATGTCATT CGCCTGCTGA CGCGCGAATT CACCGCCGGT CAGGGCGCGC GCACCAATGT CTTGCGCACC ATTTTCGTGG TCGGAGACCA GAAACAATCG ATCTATTCAT TCCAAGGCGC CGATCCCGCC GGGTTTGACC GGATGCGCCA GCATTTCGGC ACCGAGCTGG CCCAGGTCGG CACGCCGTTG CAGGAACGGC TGCTCCTGTT TTCGTTCCGA TCGTCGAGGG CCGTACTGCG TCATGTGGAC GAGACCTTCT CTCGGTTCCA GCACCAGGGC CTCGGCGGCG GGTCGGAACA CATCGCGTTT CACGAAGCCC TGCCGGGGCG GGTCGACCTG TGGCCTGCGT TGGCGAAGGC CGAAAAACAG ACGCCCCAAA ACTGGACCGA CCCGGTGGAC AAGATCGCCG CGGACGATCC GCGTCACGTA CTGGCCCGCA AGATTGCGGC AGAGATCAGA CGCCTGCTTG AGAGCGGCAC GCAGATCACC TCCGCCAAGG GCGAGACTCG CCCGATCACG CCCGGCGATT TTCTGGTTCT GGTGCAAAAA CGGTCCGAGA TCTTCCACGA GTTGATCCGC GCCTGCAAGA CCGAACGCTT GCCAATCGCG GGTTCGGACC GGCTGCGTGT GGGGGCGGAA CTGGCGGTGC AGGATTTGAT GGCACTGCTG GCCTTTGCCG CGACGCCGGA GGATAGCATG GCGTTGGCCT GCGTGCTGCG TTCCCCACTC TGCGGCTGGA CCCAGCGCGA GCTGCACGTC CTCGCACAGC CGAACCGAAA CCGCTTCCTC TGGGCGGCTT TGCGCGACAG CGACGCGCAC GGTGAAACCC GCGCTTTCCT GCAGGATGTC AGGGATCAGG CTGATTTCCT GCGCCCATAC GACCTGCTTG AACGGGTGCT AACCCGCCAT GGCGGGCGCG AACGGCTAAT TGCGCGGCTG GGCGAGGAAG CCGAGGAAGG CATCGACGTC CTGCTCGACC AAGCCCTGCA ATACGAGCAG ACCGAAATAC CCAGCCTGAG CGGCTTCGTG GCATGGTTCC GGCAGGACGA CATGAGCATT AAACGTCAGA TAGACGCCCG TCGGGACGAG ATCCGGGTGA TGACAGTCCA CGGTGCCAAG GGACTGGAAG CCCCTATCGT CATCATGCCC GATTGTGCAA AACCGTCCAA TACCAACACT CGCAGCAAGC TGCTCCCGCT TGAAGATGGC CCCTTGGTGT GGGCCGGAAA CAAGGAAACG CGCCCCGAAG TTATAAAGCC TCGCGCCGAG GAGATTGCAC TGCGCGACAC CGAAGAGCGG ATGCGCCTGC TTTATGTCGC CATGACCCGC GCCGAGAGCT GGCTGATCGT GGCCGCCGCG GGGGAGACCG GGACCGGCAC GGACAGCTGG CACGCCATGG TGACCGAGGG TATCGAGGCA CAGACGCCCC ACGAGGTGGA GTTTCCGACC GGGACCGGCT TGCGGCTTGA GCACGGGGTC TGGCCCCCCG ATGCCCCTTC CCCCATGCCC CTCCATACGG CCCATAGTCC ACAACAGCCC GCCTTCGCAC CAATGCCTCC GATGCCTGAA CGGCGCAACA CCCGTGCACC CTCCGATCTC GGTGGGGCGA AAGTGATCGA GAACGCAATC GAGGGCCTCG ACAAGGATGC GGCCCAACGA CGTGGCAAGC AGATTCACCT GCTTCTGGAG CATCTGCCGG ATCATCCACC GGAAAGTTGG GCAAGCCTCG CGCCGCGCCT TCTGGGAGCG GAGGACAACC CCGAGACTGT CGCAGACCTT CTGGCGGAAG CGCGCGGCGT CCTCGAAAAC CCCGCTTTAG AGCCGCTTTT CGCTCCGGAC ACGCTTGCCG AGGTCAGCCT GACCGCGCCC CTACCCGGCC TGAATGGCGC ACAGATCCTT GGGACAGTCG ATCGTCTCAT CATTGGACCG GAGCGTATCG TCGCCGTCGA CTTCAAAAGC AACCAGGCCG TCCCTGCGCA CCCAGAAGAC ACCCCCGAAG GCCTGCTGCG CCAGATGGGC GCTTATGCCG AAGCTCTCGC CGCGATCTAT CCGGATATGT CCATCGAGAC AGCGATCCTC TGGACCCGAA CCGCGACTCT CATGCCCTTG CCCCACGGTT TGGTGATTGC GGCGTTACAA AGGACGCCGC CAGCTTGA
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Protein sequence | MTAPAPNDAT RAQIAAADPT SSVWLSANAG SGKTKVLTDR VARLLLEDVP PERILCLTYT KAAASEMQNR LFRTLGGWSM LDDGDLRRRL AELGLLQVEI TAARCRSART LFARAIETPG GLKIQTIHSF CASLLRRFPM EAGVSPQFTE MDSRAEAELQ RAVLRQMAEG PGRDSLFALA QSVDETNLPE LMKELLSHRE ALTSPPAQGV IEKTLGLAPG DSITALSDRT FQAKDRDLIG RVAKACATGS STDAKAAAKL QELADRAPDT TWFEVLEGLL LYGATAKAGP FAPKTDAFPT KATRTALGAD MGALNDLMCR VAEARQPRLA LEIAAQTRIV HNFANVFLKA YQAGKDARGW LDFDDLILRA KTLLTDPGVA QWVLFRLDGG IDHMLVDEAQ DTSPVQWDVI RLLTREFTAG QGARTNVLRT IFVVGDQKQS IYSFQGADPA GFDRMRQHFG TELAQVGTPL QERLLLFSFR SSRAVLRHVD ETFSRFQHQG LGGGSEHIAF HEALPGRVDL WPALAKAEKQ TPQNWTDPVD KIAADDPRHV LARKIAAEIR RLLESGTQIT SAKGETRPIT PGDFLVLVQK RSEIFHELIR ACKTERLPIA GSDRLRVGAE LAVQDLMALL AFAATPEDSM ALACVLRSPL CGWTQRELHV LAQPNRNRFL WAALRDSDAH GETRAFLQDV RDQADFLRPY DLLERVLTRH GGRERLIARL GEEAEEGIDV LLDQALQYEQ TEIPSLSGFV AWFRQDDMSI KRQIDARRDE IRVMTVHGAK GLEAPIVIMP DCAKPSNTNT RSKLLPLEDG PLVWAGNKET RPEVIKPRAE EIALRDTEER MRLLYVAMTR AESWLIVAAA GETGTGTDSW HAMVTEGIEA QTPHEVEFPT GTGLRLEHGV WPPDAPSPMP LHTAHSPQQP AFAPMPPMPE RRNTRAPSDL GGAKVIENAI EGLDKDAAQR RGKQIHLLLE HLPDHPPESW ASLAPRLLGA EDNPETVADL LAEARGVLEN PALEPLFAPD TLAEVSLTAP LPGLNGAQIL GTVDRLIIGP ERIVAVDFKS NQAVPAHPED TPEGLLRQMG AYAEALAAIY PDMSIETAIL WTRTATLMPL PHGLVIAALQ RTPPA
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