| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3437 |
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| Symbol | addB |
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| ID | 5712495 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3617191 |
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| End bp | 3620157 |
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| Gene Length | 2967 bp |
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| Protein Length | 988 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641269366 |
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| Product | double-strand break repair helicase AddB |
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| Protein accession | YP_001534771 |
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| Protein GI | 159045977 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3893] Inactivated superfamily I helicase |
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| TIGRFAM ID | [TIGR02786] double-strand break repair protein AddB, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCAAC TTTTCCCCGC CCAGGACAGC CCCCGTGTGT TCGGTGTACC CATCGGACTC
GATTTCCCGG CAGAGACTGT GGCCGGACTG CTCGAACGGC TCGGGTCGCA GCCACCCCAT
GCCCTTGCTC AGGTGGAAAT CCTTGTCAAC ACGGGACGAA TGCAGCGACG GCTGCAAGAG
GTGCTGAGCG ATCGCGGGCG CGCGGGCTTC TTGCCGAAGA TCCGGCTGAT CACCGACCTC
GGGACCGAAG CCGGGACCGA CCCGGCCCCG GCGACCCTTT CGCCGCTGCG GCGTATGCTT
GATCTGCGCA GGCTGGTGCT GGGCCTACTG GAAACGACAC CGGACCTGGC CCCCCGGAGC
GCGGCACTCG ACCTGACCAT CAGTCTCGTC AGCCTTCTGG AAGAGTGCGA GGGCGAGGGA
GTATCCCTCG AGCAATTGGC CGCGCTTGAT GTCGAGGACC TGTCGGCTCA TTGGCAGCGG
GCGCTTGCGT TCATCTCCAT CATCGGGCCC TTCCTCAAGG ATAGCGGCGG CGCCGTCGGA
CCGGAGGGAC GGCAACGGGC AGCGGTCCTC CGCAAGATCG CTCAGTGGCA GGATACCCCG
CCCCGGCATC CGATCCTGAT CGCCGGGTCC ACCGGATCGC GGGGCACCAC GGCCCTGTTG
ATGACGGCGG TGGCCCGTCT GCCCCAAGGC GCGCTGCTTT TGCCCGGGTT CGACACGGAT
CAGCCCCCAA AGGTCTGGGC AGAGATGAGC GATGCGCTGA TCGGCGAAGA TCATCCGCAG
TTCCGCTTCG CCCGCCTTTT GCAGGCGCTC GATCTTGACC CCGCAAGTCT GCCCCTTTGG
ACCGATACCG CGCCTCCCGC ACCAGGACGC AATCGCCTCG TCTCCCTCGC GCTGCGGCCT
GCACCCGTCA CAGACCAATG GCGCGCCGAA GGGCCAGATT TGCGCGACCT GCCCGAAGCG
CTTGCAAATA CCACATTGAT CGAGGCCGCC TCTCAGCGTG AGGAAGCACT GAGCATCGCC
GTCGCTCTGC GCGACTCGGC CGCTGCGGGC AAACGCGCGG CCCTTATCAC ACCGGACCGA
GGTCTGACAC GCCAGGTCAC CGCGGCACTG GACCGATGGC GGATCGAACC AGATGACAGC
GCCGGTCGCC CGCTGGTCCT GTCGGCGCCG GGGCGCTTCC TGTCTCATGT GGCGGCAATG
ATGGGTGCGG AGCTGTCTGC CAGCGCGCTT CTGATCCTGC TCAAGCATCC ACTGACCCAT
TCCGAACGCC CGGACCGCGG TGACCACCTG CGCCACAGCC GCGATCTGGA GCTTCATCTG
CGAAAAGCCC CCTTCGTGGA ACTGTCCGAG GCCCGCCTGC GGGCCTGGGC GGCATCCTCC
CCGTCTCGCA CGGACAGTCC CGCCGATCCC GCGCGCGCGG CCTGGATGGA CTGGGTGCTC
GCCACGGTGG GACCCCTCAC CACACTCGAA GACGCCCCGC TCGACACGCT GGCCACGGTT
CATCGCAATG CATCAGAACG GCTTGCGGCA GGACCTGGCG CCGAAGGCGC CGGGGGCCTG
TGGGACAAAA CCGCAGGGGA GAAAGCCAAA GCCGTTCTGG ATGCCCTGGC ACTCGAAGCG
GCCCATGGGG GCTCGTTCGC GTCCGGTGAT TTCGCAGCCC TGCTGGCCCG CATGCTGGCG
CAGGAAGAAG TGCGCGATCC GGTCCGGCCC GACCCCCGGA TCATGATATG GGGCACGCTA
GAGGCGCGCG TTCAAGGCGC GGATGTCGTT ATCCTCGCCG GTCTCAACGA CGGGATTTGG
CCCAAGCGGC CCGATCCTGA CCCCTGGATG AACCGCAAGA TGCGTCACGA GGCGGGGCTC
TTGGTGCCTG AGCGTCAGGT CGGCTTGTCG GCCCATGACT TTCAGCAAGC GATGGGCGCA
CGGGAAGTGA TTCTGACGCG CGCCACCCGC GACAGCGAAG CGGAAACCGT GCCATCCCGC
TGGTTGAACC GGATCACCAA TCTGCTCGAA GGGTTGAGCG ATGAGAGCCG CGCAGCCCTT
GCGGGAATGC GCACACGGGG TGCTGCCATC GTCACCCGGG CGCGTGGCCT CGACCGACCC
GCCGCCGTGA TGCCTCTTGC GAAGCGACCT TCACCGATCC CGGCGCCGGG GCAGTTCCCG
CCGCGCATTT CGGCCTCTCG TGTCGAAACT CTCATCCGCG ACCCGTTCGA GATCTATTGT
GGCACGGTTC TGGGCCTGCG CCCTCTCGAT CCGCTGGACC GCCCTGCCGA CGCGGCCCTA
CGCGGCACGG TCCTGCACAA AGTACTGGAA ACGGCTCTGT CACAGGTGAT GGCGGGCACC
GAGATGACCG CGACCCTGCT GCGGCAGATC GCGGCCCGTG TGCTGGATGA ACACGTCCCT
TGGCCCGAGG TCAGAACCCA ATGGCGCGCC CGGTTCGAAA GCTATGCCAC CCAACTGGCA
GAGGCAGAAG TCGCCCGCCT TAGGCGAGCG ACCCCCGCCG CCCTGGAACG GCGCGGAGAG
TTGACGCTGG CCTCCGGTGT ACGCCTCACC TGCGAGGCGG ACCGGATCGA CATCGCCCCG
GATGGGACCG CCATCATCTA CGACTACAAG ACCGGAACTG TCCCTGGTGA GAAAGAAGTG
GAGGCGTTTA CCAAACAGCT CCACCTCGAA GCGGTGATCG CCGAGGCAGG CGGGTTCGAA
GACCTGCCGC CCCTGACCGT TTCCGAAATC GCCTATCTGC AGATCAACAA GGACCTCAAG
ATCCGCGCCC TTACCTTCGA GCCCGGGGAT GTCGGGCGCG CAAGGGATGA GTTCGCCAAA
ATCATGGACG ATTTTCTGTC CGGAGAACGC AGCTTCACGG CGCGCCGGAT GCCGCGCGAC
ATGAAATACG TCTCGGATTA CGACCACCTG AGCCGGTTCG GCGAATGGGA TCAGAGCGAC
ACGCCCGTTC CGGAGGAAAT GCCATGA
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| Protein sequence | MIQLFPAQDS PRVFGVPIGL DFPAETVAGL LERLGSQPPH ALAQVEILVN TGRMQRRLQE
VLSDRGRAGF LPKIRLITDL GTEAGTDPAP ATLSPLRRML DLRRLVLGLL ETTPDLAPRS
AALDLTISLV SLLEECEGEG VSLEQLAALD VEDLSAHWQR ALAFISIIGP FLKDSGGAVG
PEGRQRAAVL RKIAQWQDTP PRHPILIAGS TGSRGTTALL MTAVARLPQG ALLLPGFDTD
QPPKVWAEMS DALIGEDHPQ FRFARLLQAL DLDPASLPLW TDTAPPAPGR NRLVSLALRP
APVTDQWRAE GPDLRDLPEA LANTTLIEAA SQREEALSIA VALRDSAAAG KRAALITPDR
GLTRQVTAAL DRWRIEPDDS AGRPLVLSAP GRFLSHVAAM MGAELSASAL LILLKHPLTH
SERPDRGDHL RHSRDLELHL RKAPFVELSE ARLRAWAASS PSRTDSPADP ARAAWMDWVL
ATVGPLTTLE DAPLDTLATV HRNASERLAA GPGAEGAGGL WDKTAGEKAK AVLDALALEA
AHGGSFASGD FAALLARMLA QEEVRDPVRP DPRIMIWGTL EARVQGADVV ILAGLNDGIW
PKRPDPDPWM NRKMRHEAGL LVPERQVGLS AHDFQQAMGA REVILTRATR DSEAETVPSR
WLNRITNLLE GLSDESRAAL AGMRTRGAAI VTRARGLDRP AAVMPLAKRP SPIPAPGQFP
PRISASRVET LIRDPFEIYC GTVLGLRPLD PLDRPADAAL RGTVLHKVLE TALSQVMAGT
EMTATLLRQI AARVLDEHVP WPEVRTQWRA RFESYATQLA EAEVARLRRA TPAALERRGE
LTLASGVRLT CEADRIDIAP DGTAIIYDYK TGTVPGEKEV EAFTKQLHLE AVIAEAGGFE
DLPPLTVSEI AYLQINKDLK IRALTFEPGD VGRARDEFAK IMDDFLSGER SFTARRMPRD
MKYVSDYDHL SRFGEWDQSD TPVPEEMP
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