| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3355 |
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| Symbol | gyrB |
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| ID | 5712413 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3526685 |
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| End bp | 3529102 |
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| Gene Length | 2418 bp |
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| Protein Length | 805 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641269284 |
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| Product | DNA gyrase subunit B |
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| Protein accession | YP_001534689 |
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| Protein GI | 159045895 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.784759 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGAGA CCGCACAGGT AGCCGAAGAA TATGGCGCCG ATTCCATCAA GGTTCTCAAA
GGGTTGGAGG CTGTTCGCAA ACGGCCCGGA ATGTATATCG GGGACACCGA CGACGGCTCG
GGTCTGCACC ACATGGTGTA CGAGGTCGTC GATAACGGCA TTGACGAGGC ACTGGCCGGT
CACGCAGACG CGGTGAACGT GAAAATCCAT GCGGATTCCA GTGTCTCGGT CAGTGACAAT
GGCCGGGGTA TCCCGGTGGG CGTGCATGAG GAGGAAGGCG TTTCAGCCGC CGAAGTCATC
ATGACCCAGC TTCACGCGGG CGGGAAATTC GATAGCAACT CCTACAAGGT GTCCGGGGGT
CTTCATGGCG TCGGTGTGTC GGTCGTGAAT GCGTTGTCCG ACTGGCTGGA GTTGCGGATC
TGGCGCGACG GCAAGGAACA TGTGGCGCGC TTTGAGCATG GTGATACGGT CAAGCACCTG
GAAGTCATCG GGGATGCGGG TGACCGGACC GGCACGGAAG TCCGGTTCAT GGCTTCGACG
GGGACGTTTT CGAACCTCGA CTACTCGTTC AAGACGCTAG AGAACCGGCT GCGCGAGTTG
GCTTTCCTGA ATTCGGGGGT GCGCATCATC CTGGAGGACG AGCGCCCTGC CGAACCTCTG
CGCTCGGAGC TGTTCTATGA AGGCGGCGTG CGGGAGTTCG TGCGGTACCT CGATCGATCC
AAGACGTCGG CCATGGAAGA GCCGATCTTC ATCACCGGCG AGCGCGACGA CATCGGGATC
GAGGTCGCGA TGTGGTGGAA CGACAGCTAC CACGAGACGG TGCTGCCCTT CACCAACAAC
ATTCCGCAGC GCGACGGCGG CACGCACTTG GCCGGGTTTC GCGGCGCCCT GACCCGTACG
ATCAACGCCT ATGCGCAGTC CAGCGGGATC GCCAAGCGCG AGAAGGTGAA TTTCACCGGC
GACGATGCCC GCGAAGGCTT GACTTGCGTC TTGTCGGTGA AGGTGCCGGA CCCGAAATTC
TCCAGCCAGA CAAAGGATAA GCTGGTCTCA TCCGAGGTGC GCCCCGCAGT CGAAGGCCTG
GTGAACGAGA AGCTGGGCGA GTGGTTCGAA GAGAACCCCG CGCAGGCGAA GGTCATCGTC
GGCAAGATCA TCGAAGCCGC CCTTGCGCGG GAGGCAGCCC GCAAGGCGCG GGAGTTGACC
CGCCGCAAAA CGGCGATGGA TGTCGCCTCC CTGCCCGGCA AGCTGGCCGA TTGCCAGGAG
AAGGACCCAG CGCACTCCGA GCTCTTCCTC GTGGAGGGGG ACAGTGCCGG TGGCTCGGCC
AAGCAGGGCC GATCGCGGCA TAACCAGGCC GTTTTGCCCT TGCGCGGGAA GATCCTGAAC
GTGGAGCGCG CCCGATTCGA TCGGATGCTG TCGAGCCAGG AGATCGGCAC CCTGATCACC
GCGCTCGGTA CCGGGATCGG GCGGGACGAA TTCGATATTG GCAAGCTACG CTACCACAAG
ATCATCATCA TGACGGACGC GGATGTGGAC GGCGCGCATA TCCGGACTCT GCTGCTGACG
TTCTTCTTCC GGCAGATGCC CGAGATCATT GAGGGCGGCT ATCTCTACAT TGCGCAACCG
CCGCTCTACA AGGTCGCGCG TGGCAAGTCC GAGGTTTACC TGAAAGACCA GGCCGCACTG
GAGGATCACC TGATCGGGCA AGGGATCGAA GGTGCGGTGC TGCGCCTGCC CGGCGGTGAG
GAAATCGCGG GCAAGGATCT CGCCCGGGTT GTCGACGCCG CGCGGCAGTT CAAGCGGATC
CTGGATGCTT TTCCGACCCA TTATCCGAGG CCAATTCTTG AACAGGCCGC ACTGGCGGGG
GCGTTCGATC CCGGTAAGGC CGATGCCGAT CTCCAGAAGG TGGCGGACCA GGTCGCCGCG
CGGCTGGACC TTGTGGCGGT CGAGTACGAG CGCGGCTGGC AAGGGAGAAT TACACAGGAC
CATGGTATCC GCCTGAGCCG TGTGCTGCGC GGAGTTGAAG AGATCCGCAC TCTGGATGGC
GCGGTGCTGC GATCCGGCGA GGCGCGGAAA CTGGCCTCGG TCTCGACCGA GAGTCGGGAC
GTGTATCAAG ACCCCGCCAA ACTAGTCCGA AAGGAACGCG AAGTATCCAT CCATGGACCA
CTGGCCTTGC TGAGTACCAT TCTCGAAGAA GGCGAAAAGG GGCAGTCACT GCAACGGTAC
AAGGGTCTGG GGGAGATGAA CCCGGATCAA CTCTGGGAAA CGACCCTGGA TCCCGAGGCG
CGAACGCTGT TGCAAGTCCA GATCGAGGAT CTGGCGGATG CGGATGACAT CTTTACCAAG
CTGATGGGCG ATGTGGTTGA GCCACGTCGG GCCTTCATCC AGCAGAACGC GCTGAGCGTG
GAGAACCTGG ATTTCTAA
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| Protein sequence | MAETAQVAEE YGADSIKVLK GLEAVRKRPG MYIGDTDDGS GLHHMVYEVV DNGIDEALAG
HADAVNVKIH ADSSVSVSDN GRGIPVGVHE EEGVSAAEVI MTQLHAGGKF DSNSYKVSGG
LHGVGVSVVN ALSDWLELRI WRDGKEHVAR FEHGDTVKHL EVIGDAGDRT GTEVRFMAST
GTFSNLDYSF KTLENRLREL AFLNSGVRII LEDERPAEPL RSELFYEGGV REFVRYLDRS
KTSAMEEPIF ITGERDDIGI EVAMWWNDSY HETVLPFTNN IPQRDGGTHL AGFRGALTRT
INAYAQSSGI AKREKVNFTG DDAREGLTCV LSVKVPDPKF SSQTKDKLVS SEVRPAVEGL
VNEKLGEWFE ENPAQAKVIV GKIIEAALAR EAARKARELT RRKTAMDVAS LPGKLADCQE
KDPAHSELFL VEGDSAGGSA KQGRSRHNQA VLPLRGKILN VERARFDRML SSQEIGTLIT
ALGTGIGRDE FDIGKLRYHK IIIMTDADVD GAHIRTLLLT FFFRQMPEII EGGYLYIAQP
PLYKVARGKS EVYLKDQAAL EDHLIGQGIE GAVLRLPGGE EIAGKDLARV VDAARQFKRI
LDAFPTHYPR PILEQAALAG AFDPGKADAD LQKVADQVAA RLDLVAVEYE RGWQGRITQD
HGIRLSRVLR GVEEIRTLDG AVLRSGEARK LASVSTESRD VYQDPAKLVR KEREVSIHGP
LALLSTILEE GEKGQSLQRY KGLGEMNPDQ LWETTLDPEA RTLLQVQIED LADADDIFTK
LMGDVVEPRR AFIQQNALSV ENLDF
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