| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3326 |
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| Symbol | dctP3 |
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| ID | 5712383 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3490512 |
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| End bp | 3491489 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641269254 |
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| Product | TRAP transporter - DctP subunit |
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| Protein accession | YP_001534660 |
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| Protein GI | 159045866 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTCA AGACCGTACT GCTGGGGGCC GTGGCCGCCT GTGTCACGCC GGCGATTGCC
AGCGCCGAGA TGGTGCTGCG TTTCGGCCAT GTGGGGGCGC CCGGGTCGCT GTTCGAGGCA
TCGGTGAACG CCTTTGCCGA ATGTGCCAAC GGCAAGCTCG GCGATGCGGC CGAGGTGCAG
ACGTTTGGCG CGAGCCAGCT CGGCAATGAC CGCGAGATGC TGCAGAAGCT GAAGCTGGGT
CAGGTGCACA TGTCGCTGCC GTCCTCGGTG ATGTCCTCGG TGGCGCCGGA GTTCGGCATC
TTCGAGATGC CCTACATCAT CCGTGACCGC GAGCACATGA AGCGCGTGCA GGCCGAACTG
GGCGACACGT TCCAAGAGGC CGCGCTTGGC CAAGGCTACC GGATCATCGG CTACATGGAG
AACGGGTTTC GGCACATCAC CAACAATGTG CGCCCGATCA ACACGCCCGA AGACCTGGCC
GGTGTGAAGC TGCGCACGCC GAATGGCGAA TGGCGGGTGA AGATGTTCCA GGAATACGGC
GCGAACCCGA CGCCGATGTC CTTCTCGGAG GTGTTCACCG CGCTCCAGAC CAAGGTCATC
GACGGGCAGG AGAACCCCTA TGCCCAGATT GCATCCGCCA AGTTCCAGGA AGTGCAGAGC
TATCTGTCGA TCACTGGCCA TGTCTACACC CCGGCTTATG TGCTGGTGGC GGAGAATCAG
TGGCAGTCCT GGCCCGAGGA TGTGCGCGCG GCGCTGGAAT CCTGCGGGAC CGAGACTCAG
GACACGGTGT ATGAGATCGC CGCGAACCTG GAGACCGAAC TGCTCGACGT GATCAAGGCG
GCTGGTGTGG AAGTGAACGA AGCCGACAAG GCGGCGTTCG TGGCGGCCTC CACCCCGATC
TATGACGCCT TCGCGGCACA GGTCGAGGGT GCTGCCGAAA TGATCGAAAC GGTGCAGTCC
CTGGCCGAAG GCTCCTGA
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| Protein sequence | MKLKTVLLGA VAACVTPAIA SAEMVLRFGH VGAPGSLFEA SVNAFAECAN GKLGDAAEVQ
TFGASQLGND REMLQKLKLG QVHMSLPSSV MSSVAPEFGI FEMPYIIRDR EHMKRVQAEL
GDTFQEAALG QGYRIIGYME NGFRHITNNV RPINTPEDLA GVKLRTPNGE WRVKMFQEYG
ANPTPMSFSE VFTALQTKVI DGQENPYAQI ASAKFQEVQS YLSITGHVYT PAYVLVAENQ
WQSWPEDVRA ALESCGTETQ DTVYEIAANL ETELLDVIKA AGVEVNEADK AAFVAASTPI
YDAFAAQVEG AAEMIETVQS LAEGS
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