| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3318 |
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| Symbol | serA1 |
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| ID | 5712375 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3481012 |
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| End bp | 3482607 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641269246 |
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| Product | D-3-phosphoglycerate dehydrogenase |
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| Protein accession | YP_001534652 |
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| Protein GI | 159045858 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.677421 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCCCA AAGTACTCGT CTCCGACAAG CTCTCGGAAA CCGCCGTTCA GATTTTCCGC
GACCGCGGCA TCGAGGTCGA TTTCGAACCG TCCCTCGGCA AGGACAAGGA CAAGCTCGCG
GAAGTCATTG GAAAATATGA CGGTCTGGCC ATCCGCTCGG CCACCAAGGT CACCGAGAAG
CTGCTGGCCC ATGCCGACAA CCTCAAGGTC GTGGGCCGCG CCGGGATCGG CACCGACAAC
GTGGACAAGG TCGCCGCCTC CAAGAAGGGC GTGATCGTGA TGAACACCCC CTTCGGCAAC
ATGATCACCA CCGCCGAACA CGCCATCGCG ATGATGTTCG CCGTCGCCCG CCAGATCCCC
GAGGCCAGCG CGTCGACCCA TGCGGGCAAG TGGGAGAAGT CGAAATTCAT GGGGGTCGAG
TTGACCGCCA AGACCCTGGG CGTGATCGGC GCGGGCAATA TCGGCGGTAT CGTCTGCGAA
CGCGCCCTGG GCTTGAAGAT GAAGGTCATC GCCTATGATC CCTTCCTGTC CGAAGAACGC
GCCGACAAGC TTGGGGTGGA AAAGGTCGAT CTCGACACCC TGCTGGCGCG GGCCGATTTC
ATCACGCTGC ACGTGCCGCT CACGGACCAG ACCCGCAACA TCCTGAGCCG CGAGGCGCTG
GAGAAGACCA AGAAGGGCGT GCGTATCATC AACTGCGCGC GCGGCGGGCT GGTGGACGAA
CAGGCGCTCG CGGATCTTCT GAAATCCGGT CATGTGGCCG GAGCCGCCTT CGACGTCTTC
GCCGAGGAAC CCGCGACCGA GAACCCGCTT TTCGGCCTGC CCAACGTGGT CTGCACCCCG
CATCTGGGCG CCTCCACCAC CGAGGCGCAG GAAAACGTGG CCCTGCAGGT GGCCGAGCAG
ATGTCGAACT ACCTGCTCAG CGGGGCGGTG GAAAACGCGC TCAACATGCC GTCGGTGACC
GCCGAGGAAG CCAAGACCAT GGGGCCTTGG GTCAAACTGG CGGGCCATCT CGGCACCTTC
GTGGGCCAGC TGACCGACGA GCCCATCGAC AGCATCGAGA TCCTCTACAA CGGCACGGTC
GCCAAGATGA ACCTCGAGGC GCTGAACTGC GCCGTGATCG CGGGCATCAT GCAGGCCACG
AACCCGGACG TGAACATGGT TTCCGCCCCG GTAATCGCCA AGGAACGCGG CATCGGTCTG
TCGACCACCA CCCAGGACAA GTCCGGCGTG TTCGACGGCT ACGTCAAGCT GACGGTCAAG
ACCGACCAGC GGACCCGGTC CATCGCGGGC ACGGTGTTCT CCGATGGCAA GCCGCGCTTC
ATCCAGATCA AGGGCATCAA TATCGACGCC GAGATCGGCG AGCACATGCT CTACACCACC
AACAAGGACA CGCCGGGCAT GATCGGCACC CTGGGGGGGA TCCTGGGTGA GAACCAGGTC
AACATCGCGA ACTTCACCCT CGGCCGGAAC GAGACCAACG GCGACGCCAT CGCCATGCTC
TATCTCGACG CCCCCCTGCC GCGGGACGTG CAGGACAAGC TGATCGCGAC CGGCCTGTTC
CAGCAGGTGC GCCCCCTGCA ATTCAACGTC GCCTGA
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| Protein sequence | MAPKVLVSDK LSETAVQIFR DRGIEVDFEP SLGKDKDKLA EVIGKYDGLA IRSATKVTEK
LLAHADNLKV VGRAGIGTDN VDKVAASKKG VIVMNTPFGN MITTAEHAIA MMFAVARQIP
EASASTHAGK WEKSKFMGVE LTAKTLGVIG AGNIGGIVCE RALGLKMKVI AYDPFLSEER
ADKLGVEKVD LDTLLARADF ITLHVPLTDQ TRNILSREAL EKTKKGVRII NCARGGLVDE
QALADLLKSG HVAGAAFDVF AEEPATENPL FGLPNVVCTP HLGASTTEAQ ENVALQVAEQ
MSNYLLSGAV ENALNMPSVT AEEAKTMGPW VKLAGHLGTF VGQLTDEPID SIEILYNGTV
AKMNLEALNC AVIAGIMQAT NPDVNMVSAP VIAKERGIGL STTTQDKSGV FDGYVKLTVK
TDQRTRSIAG TVFSDGKPRF IQIKGINIDA EIGEHMLYTT NKDTPGMIGT LGGILGENQV
NIANFTLGRN ETNGDAIAML YLDAPLPRDV QDKLIATGLF QQVRPLQFNV A
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