| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3281 |
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| Symbol | |
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| ID | 5712338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3445107 |
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| End bp | 3448478 |
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| Gene Length | 3372 bp |
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| Protein Length | 1123 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641269209 |
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| Product | putative endonuclease/exonuclease/phosphatase |
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| Protein accession | YP_001534615 |
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| Protein GI | 159045821 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2374] Predicted extracellular nuclease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.310372 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACGCG ATTTTTCCTT GGATGAGACG CATCAGGCGG CGGCTGGCAG CATTTTGATC
AACGAGGTTC TGGGCAGCAC CACCGGCCCC GACGCGGAAT ATATCGAGCT GATCGGGACA
CCAGGCGCGT CGCTCGCCGG GCTGTCGCTG ATCGTGGTCG AAGGCGACGC GGGCAGCCCG
GTCGGCAACA TCGACCAGCG TCTGGACTTC GGGCCTGACG ACGCGATTGC GGGCAACGGC
TTCTTCCTGG TCGCCAGCGT GCAGGCGCAG CTGGTCTACG GGGTCGGCAC GAACCTGGAG
CTGCCGGAGA ACTTTCTCGA GAACTCCTCC TACACCCTGG CGCTGGTGGA GACCGCGTCG
CTGAGCGACG GGGCCGTGAG CGGGTCCGAG GTGGTTCTGG ACGCGGTCGG CGTGACCGAT
GGTGGGCCGG AGGATACGTT TTTCTTCGGT GCGCCGGTCA TCGGGCCGGA CGGGTCCTTC
CTGCCTGCGG GCGTGGGGCG GATCGTGGAT GGTGTCGATA CGGATACCGC CGCGGACTGG
CAGATCCTGA ATTTCAACAA CGAGACACCG AATGACCCTA CCTTCGGCGA GGCCGCGCCC
GTACCCCTCG TGATCAACGA GGTCCTGGGG AGCACCACCG GCCCGGACAG CGAGTATATC
GAGCTCTTCG GTACGCCGGG CGCGTCCCTT GCCGGGCTGT CGATCATCGT GATCGAGGGC
GACAACGGGT CTCCCCAAGG CAATATCGAC GCGCAGTTCG ATTTCGGCCC CGGCGATGTG
ATTGGCGACA ACGGGTTCTT CCTGATCGCC AATGCCACGG CGGCAGGCAC CTATGACGTG
ACGCCCAACC TCGCCCTGCC CGACAATTTC ATCGAAAACT CCACCTATAC CATCGCGCTG
GTCGAGACGG GTTCGATCAC CGACGGGGTC GTGACCGGGA CCGAGGTCGT GCTGGATGCG
GTCGGTGTCA CAGATGGCGG CGACGGCGAT CAGACCTTCT TCGGCGCGCC CGAGGTCGGT
CCGGACAGCA GTTTCCTGCC CGCGGGCGTG GGCCGGATCG CGGACGGGGT GGATACGGAT
ACAGCCGCCG ACTGGCAGAT CCTGAGTTTC AACAACGATG CGCCGAACGA TCCCACACCG
GGCACCGGCG ATTCTGGCGG GGGCGGTGGC GACGTGTCGC TGGATGACGA TCCCACGCTG
CTCTCGGCGA TCCAGGGCGA TGGGGACGAG AGCCCGCTCG TGGGGACCGA GGTGGTGATC
GAGGTCGTGG TGACCGGCGA CTACCAGGAT GGCGACGCCG ACAGCTTCCG TGAACTCGGC
GGGTTCTTCG CCATGGAAGA GCCGGAGGAT TTCGACGCCG ACACCGCCAC CTCCGAGGGG
ATATTCGTCG ATGACAGCGG GCTGGCCGCG CCGCTCGACG TGGCGGAGGG CGACATCGTC
CGCGTGGTCG GCATCGTGCA GGAGGATTTC GGCCGCACCG TGCTGGTGGC CAGCCAGATG
CGGGTCGAGG TTGCCGGGGC CTATGAGGAC ATCGCCGACC TGGCGGTGGA GACCGATCTG
CCGGGCCTAG AGGACCGCGA AGCCTTCGAA TCGATGCTGA TCGAGATCAC CGAGACCCTG
ACCATCACCG AGAGCTTCGA TTACGAGCAG TTCGGCGAAA TCACCGTCTC GTCCGAAGGC
GTGCTCTATC AATACACTCA ACTCAACGCG CCGGATGTGG ACGGCAACGC GGCCAATGCG
GCCTTCGTGG CCGACAACAC GATCCAGATC GACGATGGCA GCGACGGGCG CCGCAGCGAT
CTCAGCCCGC TCTTCGAGCC GGACGGGGAC CTGATCGGCG GGGTGGCGGA CGGTCCGCGC
CTGGGGCAGG ACCTGGAGCC GATCATCGGT GTGGTGGATT TCAATTTCGG TGAATACAAG
CTGCGCCTGC CTCAGGCCGC CAGCTTCGAG GCCATTGCGG AAAGCAACCC GCGCCCGGAG
GAGGCCCCCG ACGTGGGCGG CAGCCTCAAG GTCGTCAGCT TCAACGTGCT GAACTACTTT
ACGACGCTGG AGGGGCTGAC CGATAACGGC AACACCCCGC GCGGGGCGGA AAGCCCCGAG
GAGCTGGAGC GGCAGGCCGA GAAGCTCGTG AGCGCGTTTC TGGAGATGGA CGCGGATGTC
TACGGGCTGA TCGAGCTGGA GAACGATTTT GCCTCCGATC CGAACGATCC CACGGATGTG
ACCGCGATCC AGGACCTGGT GGACCGGCTG AACGCCGCCT CGGGGGCCGA GATCTACGAT
TTCGTGGACC CGGGCCAGGA ATTCGTGGGC ACCGATGCGA TTGCGGTGGG CTTCATCTAC
AAGACCACCA CGGTGGGTCT GGTGGGCGAT GCCGCGATCC TCGACACCCA GGCCTTCCTC
GATCCGCTGG ATGACGGTGA CGACAGCAAT GGCGACGAGA CCCCGAATGG TGACAGCTTC
AACCGGGCCG CGGTCGCGCA GACCTTTGTC GAGATCGAGT CCGGTGGCGA GTTCACGGCG
GTGGTCAACC ATTTCAAGTC CAAGGGCTCT CTCACCGGCG CGGCCGAAGA TGAGAACGCG
GGCGATGGGG CGGGCAACAA CAATGCCACT CGCGAGGCCG CGGCGGCCGA GCTGGCCGCC
TGGCTGGAAA CCAACCCGAC CGGCTCGGAC GATCCGGATG TGCTCATCCT CGGGGACCTG
AACTCCTACG CGCGGGAGAC GCCGATCACT ACGCTGGAGG ACGCGGGTTA CACCAACCTC
GTCAGGGCGC TGTCGGGGGA GGAGGCCTAT GGCTACCGCT TCAGCGGAGA AGTCGGCTCG
CTCGACTATG CCATGGGCAC CGACAGCATG ACCTCCCAGG TCACGGGCGC GGTGGAGTGG
ACCATCAATT CCGATGAGTT CGTGATCTAC GATTATAACG AGGAATCCAC CTTCGGCAGT
CCGATCCTGC GGCCCACCGA CCAGGGTCTG TTCGACGGGA CGAACCCGGC GCGCAACTCG
GACCACGACC CGGTGATCGT CGGGCTGGAT CTGGAAAGCG ACCGGATCAA CGAAATCCTC
GGAAATGTGC GCAGCAACTT CCTGCGCGGC ACGGACGAGG CGGACCGGAT CGACGGGCAG
GGCGGCGCCA TCGACGTGAT GACCGGCAAT GGTGGCGCGG ACGTGTTCGT CTTCTTCGAC
GAAGAAGGGT TGAACAACCG GCTGCGCATC ACCGACTACA CCGTGGGCGA GGACGTGATC
GACCTTGCCG GGCTGGAGGT GCGCAGCGTG TTCGAGGGCG CGCGCGGCGT GACGATCCGG
CTGGACACGG ACGGTGTCGA TTACATTCGC GTCCTCGGGG TCAGCGATAT CGACGACATC
GCCTTCCTTT GA
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| Protein sequence | MARDFSLDET HQAAAGSILI NEVLGSTTGP DAEYIELIGT PGASLAGLSL IVVEGDAGSP
VGNIDQRLDF GPDDAIAGNG FFLVASVQAQ LVYGVGTNLE LPENFLENSS YTLALVETAS
LSDGAVSGSE VVLDAVGVTD GGPEDTFFFG APVIGPDGSF LPAGVGRIVD GVDTDTAADW
QILNFNNETP NDPTFGEAAP VPLVINEVLG STTGPDSEYI ELFGTPGASL AGLSIIVIEG
DNGSPQGNID AQFDFGPGDV IGDNGFFLIA NATAAGTYDV TPNLALPDNF IENSTYTIAL
VETGSITDGV VTGTEVVLDA VGVTDGGDGD QTFFGAPEVG PDSSFLPAGV GRIADGVDTD
TAADWQILSF NNDAPNDPTP GTGDSGGGGG DVSLDDDPTL LSAIQGDGDE SPLVGTEVVI
EVVVTGDYQD GDADSFRELG GFFAMEEPED FDADTATSEG IFVDDSGLAA PLDVAEGDIV
RVVGIVQEDF GRTVLVASQM RVEVAGAYED IADLAVETDL PGLEDREAFE SMLIEITETL
TITESFDYEQ FGEITVSSEG VLYQYTQLNA PDVDGNAANA AFVADNTIQI DDGSDGRRSD
LSPLFEPDGD LIGGVADGPR LGQDLEPIIG VVDFNFGEYK LRLPQAASFE AIAESNPRPE
EAPDVGGSLK VVSFNVLNYF TTLEGLTDNG NTPRGAESPE ELERQAEKLV SAFLEMDADV
YGLIELENDF ASDPNDPTDV TAIQDLVDRL NAASGAEIYD FVDPGQEFVG TDAIAVGFIY
KTTTVGLVGD AAILDTQAFL DPLDDGDDSN GDETPNGDSF NRAAVAQTFV EIESGGEFTA
VVNHFKSKGS LTGAAEDENA GDGAGNNNAT REAAAAELAA WLETNPTGSD DPDVLILGDL
NSYARETPIT TLEDAGYTNL VRALSGEEAY GYRFSGEVGS LDYAMGTDSM TSQVTGAVEW
TINSDEFVIY DYNEESTFGS PILRPTDQGL FDGTNPARNS DHDPVIVGLD LESDRINEIL
GNVRSNFLRG TDEADRIDGQ GGAIDVMTGN GGADVFVFFD EEGLNNRLRI TDYTVGEDVI
DLAGLEVRSV FEGARGVTIR LDTDGVDYIR VLGVSDIDDI AFL
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