| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3180 |
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| Symbol | nirS |
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| ID | 5712236 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3341772 |
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| End bp | 3343523 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641269107 |
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| Product | nitrite reductase precursor |
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| Protein accession | YP_001534514 |
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| Protein GI | 159045720 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.795013 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.689934 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGAT CCGCAATCCG GCGAACGAGC CTACTTGCCA GTGCCGCGTT TTTCGCAGTC
CTGACAGCGG GCGGAGCAAT CGCGCAGGAC AAGCCCGAAG ACCACGCCAA CAGCCCCGCG
GGCGCCTATG AGCCCAGCAT GACAACGCTT GGGCAACTCA ACATCGAAAT TCCCGGCCGC
AAGCCCGGTG ATCCTGTGAT CTCGCAGGCC GAGTACGACA AGGCCAACAC GATCTATTTC
GAGCGTTGCG CCGGCTGCCA CGGGGTTCTG CGCAAGGGCG CGACCGGCAA GGCGCTGACG
ACTGACCTCA CCCGCGAAGG CGGCTACGAG TACCTGCGCG ACTTCATCAC CTATGGCTCC
CCGGCGGGCA TGCCCAACTG GGGCACCTCG GGCGAGATGA CCGAAGAAGA CGTGGACCTG
ATGGCCCGCT ACCTTCTGCT GGAGCCCGCG CAGCCGCCCG AATTCGGGAT GGCCGAGATG
CGCGAGACCT GGAAGGTGCT CGTGGCACCG GAGGACCGCC CGAAAGAGAA GATGAACGAT
ATCGATATCG ACAATCTCTT CTCTGTCACG TTGCGCGATT CGGGCCAGAT CGCCCTGATC
GACGGCGCCA CCTACGAGAT CCACAGCATC ATCGAAACCG GCTACGCGGT TCATATCAGC
CGGATTTCGG CCTCGGGACG GTACCTGATG GTGATCGGGC GCGACGCGCT GATCAACATG
ATCGACCTGT GGATGGAAGA GCCCGCAACG GTCGCCACGA TCAAGATCGG CACCGAAGCG
CGGTCGGTCG AAACCTCGAA GATGGAAGGC TACGAAGACA AGTACGCGAT CGCCGGGGCC
TACTGGCCGC CGCAATACGT GATCATGGAC GGCGACACCC TGGAGCCGCT CAAGATCCAG
TCCACCCGCG GCATGATCTT CGACGAGCAG ACGTACCACC CCGAACCGCG CGTGGCGGCG
ATCCTGTCCT CGCACTACCG GCCGGAGTTC ATCGTCAACG TCAAGGAGAC GGGCAAGATC
CTGTTGGTCG ACTACTCGGA CATCCGCAAC CTGAAGGTGA CCGAGATCGA GGCCGAGCGC
TTCCTGCACG ACGGCGGTCT CGACAGCACC AAGCGGTACT TCCTGACGGC GGCGAACGCC
CGCAACAAGA TCGCGGTGAT CGACACCAAG GAAGGCGAAC TCACGGCGCT GCTCGACTCC
GATGGCCTGA CCCCCCACCC GGGGCGTGGC GCGAACCTGA ACCACCCGGT GCACGGGCCG
GTCTGGGCAA CCTCGCACCT CGGCGACGAG ACGGTGGCGT TGATCGGCAC CGACCCCGAG
GGTCACCCTG ACGAGGCCTG GACCGTGGTC CAGCAGCTCT ATGCCATGGG CGGCGGGTCG
CTCTTCGTGA AGTCGCACCC GACCTCCGAG CACCTCTATG TGGACGCACC GCTCAACCCG
GATGCCGAGG TGTCGGGATC GGTCGCGGTC TTCAAGGTGT CCGAGCTTGG CCAGGAAGAG
CCGGAATACA CGGTTCTGCC GATCGTCGAG TGGGCCGGTA TCACCGAGGG CCAACCCCGC
GTGGTGCAGG GCGAGTTCAA CAAGGCAGGC AACGAGATCT GGTTCTCTGT CTGGAACGCC
GCTGACCTGA CCTCCGCCAT CGTGGTGGTC GACGACAAGA CGCTGCAGCC CAAGCACGTG
ATCAAGGACG AGCGCCTGAT CACGCCGACC GGCAAGTTCA ACGTCTACAA CACCAGGGCC
GACGTCTACT GA
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| Protein sequence | MTRSAIRRTS LLASAAFFAV LTAGGAIAQD KPEDHANSPA GAYEPSMTTL GQLNIEIPGR
KPGDPVISQA EYDKANTIYF ERCAGCHGVL RKGATGKALT TDLTREGGYE YLRDFITYGS
PAGMPNWGTS GEMTEEDVDL MARYLLLEPA QPPEFGMAEM RETWKVLVAP EDRPKEKMND
IDIDNLFSVT LRDSGQIALI DGATYEIHSI IETGYAVHIS RISASGRYLM VIGRDALINM
IDLWMEEPAT VATIKIGTEA RSVETSKMEG YEDKYAIAGA YWPPQYVIMD GDTLEPLKIQ
STRGMIFDEQ TYHPEPRVAA ILSSHYRPEF IVNVKETGKI LLVDYSDIRN LKVTEIEAER
FLHDGGLDST KRYFLTAANA RNKIAVIDTK EGELTALLDS DGLTPHPGRG ANLNHPVHGP
VWATSHLGDE TVALIGTDPE GHPDEAWTVV QQLYAMGGGS LFVKSHPTSE HLYVDAPLNP
DAEVSGSVAV FKVSELGQEE PEYTVLPIVE WAGITEGQPR VVQGEFNKAG NEIWFSVWNA
ADLTSAIVVV DDKTLQPKHV IKDERLITPT GKFNVYNTRA DVY
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