| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3173 |
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| Symbol | nirJ |
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| ID | 5712229 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3336270 |
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| End bp | 3337484 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641269100 |
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| Product | putative nitrite reductase heme biosynthesis J protein |
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| Protein accession | YP_001534507 |
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| Protein GI | 159045713 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0535] Predicted Fe-S oxidoreductases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.992211 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCCGGC TGAGCCATTA TCTCGACCAG CTCTATCATC CGACCCCGCC GCGTATCGCC
AGGGGCACGC CAAAGCCGGT CGTGATCTGG AACCTGACGC GGCGCTGCAA TCTCAAGTGC
AAGCATTGCT ACACGGTCTC GGCGGATGTG GATTTCCCGG GCGAGCTGAC GGCGGCCCAG
GCCCGCGAAA CGCTGGAGGA TATCGGACGC TTCAAGGTGC CCGCGCTGAT CCTGTCCGGG
GGCGAGCCCT TGCTGCGCGA TGACCTCTTC GCGCTGGCCA AACGCGCGCG GGCGTTGACC
CGCGTGCTGG CCCTGTCCAC CAACGGTACC GGCGTGATCG GGTCCAAGGC CGACCGCGTG
GCGGAGATCG GGTTCGACTA TGTCGGCATC TCGATCGACG GGATCGGCGC CACCAACGAC
GCTTTCCGCG GCGTGATCGG TGCCTATGAA CAGGCGCTGG CCGGCGTGCG TTCGTGCAAG
CGGCGCGGGA TCAAGGTGGG CCTGCGCTTC ACCATCACCG AACAGAATGA GAGCCAGCTG
CCCGAGCTTC TGAAGCTCTG CGATGACGAG GGGGTGGACA AGTTCTACCT GTCGCACCTG
GTCTATGCCG GGCGCGGCAA CAAGAACCGG GGCGAGGATG CCGACCATGC CCGCACCCGC
CGCGCCATGG ACCTGCTGAT CGCACGCGCG CTGGAAAGTG CCGAGGGCAG GGGCCATCCG
CTGGAAATCG TGACCGGCAA CAACGATGCC GACGCGGTCT ATTTCCTGAA CTGGGCAAAA
GCCAATTTCC CCGCCGCGCA AGTGGCCCAT CTGCGCAAGC ACCTGGAGGC CTGGGGCGGA
AATGCCTCGG GCGTGGGGGT TGCCAATATC GACACCCAGG GCGACGTGCA CCCTGACACC
TACTGGTCCG AATACACCGT CGGCAGTGTC AAGCAGACCC CGTTTTCCGA GCTCTGGACC
GGGCCCGACC CGATGCTGGC CGAGCTGCGC CGCCGTCCGC GGCCGCTAAA GGGCCGGTGC
GGAGCCTGTG CCCACCAGGC GGTCTGCGGC GGCAACACGC GCATTCGCGC GCTTCAGCTG
ACCGGCGACC CCTGGGCCGA AGACCCTGCC TGCTATCTCA CCGCGGCCGA AACCGGCACT
GCAACGGATA TCGACCGCCT GACCGTCAGA CCTTTCATCG GAGACCGACA TGACCCCAAG
CCGGCTTTTG TCTAG
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| Protein sequence | MFRLSHYLDQ LYHPTPPRIA RGTPKPVVIW NLTRRCNLKC KHCYTVSADV DFPGELTAAQ
ARETLEDIGR FKVPALILSG GEPLLRDDLF ALAKRARALT RVLALSTNGT GVIGSKADRV
AEIGFDYVGI SIDGIGATND AFRGVIGAYE QALAGVRSCK RRGIKVGLRF TITEQNESQL
PELLKLCDDE GVDKFYLSHL VYAGRGNKNR GEDADHARTR RAMDLLIARA LESAEGRGHP
LEIVTGNNDA DAVYFLNWAK ANFPAAQVAH LRKHLEAWGG NASGVGVANI DTQGDVHPDT
YWSEYTVGSV KQTPFSELWT GPDPMLAELR RRPRPLKGRC GACAHQAVCG GNTRIRALQL
TGDPWAEDPA CYLTAAETGT ATDIDRLTVR PFIGDRHDPK PAFV
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