| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3157 |
|---|
| Symbol | |
|---|
| ID | 5712213 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 3322458 |
|---|
| End bp | 3323468 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641269084 |
|---|
| Product | TRAP transporter - DctP subunit |
|---|
| Protein accession | YP_001534491 |
|---|
| Protein GI | 159045697 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTGGA AACTTCACAC GCTTGCCATC GCTTCACTCG GACTCAGCGC CTTGGTCACC
CCGGCGCTCG CCGCGGATTG GAAGTTCAAC AACGGGTTGC CCGAGGGTCG AAGCGAATCC
CAGCAGCTCG ACCAGTTCGC CGCGGATGTG GCCGAGCTGA CCGAGGGCCG GGTCAATATC
GACGTGTTCC ATGGCGGGTC GCTCAACCTC AAGAACGAGG ATGTGGTGCG CTGGCTGCCC
CAGGGCGCGG TGGAGATGGG TCTTGTCTGG GCGAATTACC TGGGCCGTGA CGCGCCCGCG
CTGAACGCGG TGCTGGTGCA GGGGTCGGTC GGCAGCCCGG AGGAGTTGAT CACCGTCCTG
CCGGAAATCC AGGAGATCTA TGCCGAGGAA CTGGCGGAAT GGGGCATCGT GCCGGCGGGC
TACATGGCGT TGCCGCTCTT GCAGGCGTCG ATCTTCTGCA AGGGCGAGCC GGTGCGCACC
CTCGACGATC TGCGCACCAA GAAGCTGCGC GTCTGGAGCG GCGACCAGGT GGAGACCTTC
ACCAAGCTTG GCGTGGCGGC CCAGATCGTC GGGCAAACCG AGCTTTACGT GGCACTGCAG
ACCGGCGTGG TGGACTGCGC GGTGTACCCG GCGCTTTTTG CACACACGAT CTCGCTGCAT
GAGGTGACGG ATTATGCCTC CTACCTCTAT CCGGTGGCGG GCGTGCCCTA TGTGCTGGGT
GTGAGCGCGG GTGCCTGGGA AGACCTGAGC GACGCGGATC GCGCGGCGAT CACCACCGCC
GCGGACCGGG TGTGGGAGCG CACCAACGCC TATGAGGCCG CCGAGGAGAA CGAGATGGCC
GCGCGGGCCA AGCTGGAAGA ACAGGGGCTT GAATTCCTGG AGCCGTTCTC GGACGAGGAC
CGGGCGGCCT TCCTCGAAGC GGCCTCCGCC ACCTGGGCGG AACTGGCCGA AGAGGCGGGC
GGAAACGCCC CGGCCTACCG GCAGCGGATG CTCGACGCGC TCGGGCGCTG A
|
|---|
| Protein sequence | MTWKLHTLAI ASLGLSALVT PALAADWKFN NGLPEGRSES QQLDQFAADV AELTEGRVNI
DVFHGGSLNL KNEDVVRWLP QGAVEMGLVW ANYLGRDAPA LNAVLVQGSV GSPEELITVL
PEIQEIYAEE LAEWGIVPAG YMALPLLQAS IFCKGEPVRT LDDLRTKKLR VWSGDQVETF
TKLGVAAQIV GQTELYVALQ TGVVDCAVYP ALFAHTISLH EVTDYASYLY PVAGVPYVLG
VSAGAWEDLS DADRAAITTA ADRVWERTNA YEAAEENEMA ARAKLEEQGL EFLEPFSDED
RAAFLEAASA TWAELAEEAG GNAPAYRQRM LDALGR
|
|---|
| |