Gene Dshi_3078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3078 
Symbol 
ID5710930 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3246273 
End bp3246977 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content68% 
IMG OID641269005 
ProductAzlC family protein 
Protein accessionYP_001534412 
Protein GI159045618 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1296] Predicted branched-chain amino acid permease (azaleucine resistance) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCAGCC TCTATCTCCA GGGCCTGCGC CAAGGCGCGC CCTTTCTGCT CGTGACCGTG 
CCCTTCGGCA TGCTCTTCGG TGTGGTCGCC ACCGAGGCGG GGCTGAACAT CGCCGAGGTG
ATGGGATTCA GCCTTCTGGT GATCGCGGGG GCCGCGCAAT TCACGGCCGT GCAACTTCTG
AGCGAGAACG CCCCGGTGAT CATCGTGCTG GCCTCGGCCC TGGCGGTGAA CCTGCGCATG
GCGCTCTATT CCGCGTCGAT CGCGCCGCAT CTCGGCCCCC TGCCCGTCTG GCAGAAGGCG
ATTTGCGCCT ATTTTCTGGT GGATCAGACC TATGCCGTCT CTGTCGCCCG GTTCGAGAAG
GACCCCGCAT TGCCCCTGCG GGAGCGGTTC GCCTTCCATC TCGGCGCGGC CTCGCTGATC
TGCCTGTGCT GGTACCCCGC GACCTGGACC GGGGCGGTCC TGGGGGCGCG GATACCGCCG
GAAATGGCGC TGGATTTCGC CCTGCCGATC ACCTTCCTCG CGCTGGTGGC CCCGGCCCTG
ACCAGCCTGG CCCATGTGGT CGCGGCCTTC ACCGCGACCG TTCTGGCGCT GGCCTTTGTC
GGCCTGCCCT TCAGCCTGGG CACCATCTTT GCGGCGGGCT GCGCGATGCT CGTCGGCGCC
CGGGTGGAGC TGTGGCAGAC CCGCCGCCGG GAGGCTGCCC GATGA
 
Protein sequence
MSSLYLQGLR QGAPFLLVTV PFGMLFGVVA TEAGLNIAEV MGFSLLVIAG AAQFTAVQLL 
SENAPVIIVL ASALAVNLRM ALYSASIAPH LGPLPVWQKA ICAYFLVDQT YAVSVARFEK
DPALPLRERF AFHLGAASLI CLCWYPATWT GAVLGARIPP EMALDFALPI TFLALVAPAL
TSLAHVVAAF TATVLALAFV GLPFSLGTIF AAGCAMLVGA RVELWQTRRR EAAR