| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3048 |
|---|
| Symbol | |
|---|
| ID | 5710900 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 3216579 |
|---|
| End bp | 3217361 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641268975 |
|---|
| Product | GntR-family transcriptional regulator |
|---|
| Protein accession | YP_001534382 |
|---|
| Protein GI | 159045588 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2186] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.168987 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGACC CCATCGCCCA GACCCCCCGC TACCGGCTCG TGGCCGAAGC CATCGCCGGC
AAGATCACCG AAGGCGTCTT TCCCACCGGC GAGAAACTGC CCCCCGACCG GGTGCTGGTC
GAGGAGTTGG GCGTCAGCCG CGCGACCCTG CGCGAGGCGC TGATCGCGCT GGAGGTGAAG
GGCTATATCG AGACGCGGTT CGGGTCCGGG GCCTATGTGC TCGGCCCGCC CGGTGCCGTG
GCGGAGGATG CGGACCAGAA GCTCGCCGCC GTGGTGCCCG TCGCCCCGGT GCCGGGGCCG
TTCGAGGCGC TGGAGGCAAG GCGCCTGATC GAAGGGGAGC TGGCCGCGCT CGCCGCGCAA
GCGATCACGC CCGCACAGCT CGACACGCTC TGGGGCTGCC TTCAGGCGCT GGAGAGCGCT
GGGAGCGGCT GGGACGCCGA AGCCGACGCC CGGTTCCACG AGGTGATCGC CACGGCGGCG
GGCAACACGG TCCTGGCTCG TCTGGCGGCG CAATTCTGGC GCGACCAGAC CGAAAACCCC
CTCTGGACCG CGATCCGGAG TGCCGTGGCC GACAGCAACC TGCGCCCGCA GTTGGTGGCC
GAACACGAGG CGATCATCGA GGCGCTGACC GAAGGCGCGC CGGAGGCCGC GCGCGCCGCC
ATGCACGCCC ATCTGGACAA TTTCGCCCGG ACCCTGCTGG CCCAGTGGGA CGCGCCCGAG
GAAGGCAGCA CCGAGGCCGC CCCCCATGCG CGCCTGCGCG ACAGCCTGGG GCAGGCGGGC
TGA
|
|---|
| Protein sequence | MFDPIAQTPR YRLVAEAIAG KITEGVFPTG EKLPPDRVLV EELGVSRATL REALIALEVK
GYIETRFGSG AYVLGPPGAV AEDADQKLAA VVPVAPVPGP FEALEARRLI EGELAALAAQ
AITPAQLDTL WGCLQALESA GSGWDAEADA RFHEVIATAA GNTVLARLAA QFWRDQTENP
LWTAIRSAVA DSNLRPQLVA EHEAIIEALT EGAPEAARAA MHAHLDNFAR TLLAQWDAPE
EGSTEAAPHA RLRDSLGQAG
|
|---|
| |