| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3046 |
|---|
| Symbol | ttuD |
|---|
| ID | 5710898 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 3214330 |
|---|
| End bp | 3215577 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641268973 |
|---|
| Product | Hydroxypyruvate reductase |
|---|
| Protein accession | YP_001534380 |
|---|
| Protein GI | 159045586 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2379] Putative glycerate kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.418895 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.698329 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCCG ATCCCGAACC TTTCCTGCGC GGGCTGTTCC GGGCGGCTGT GGCGGCGGCG
GATCCGGGCC TCGCGGTGCC GAACTTCCTG CCCGCCAAGC CCGCCGGGCG CGTGGTCGTG
GTCGGGGCCG GGAAGGCGTC GGCCAAGATG GCGCAGGCGG TCGAGGCCGC GTGGGGCCCG
TGCGAGGGGA TTGTGATTGT GCCCTATGGC GGCGCGTTAC CCACTGAAGG CATCGAGATT
GTCGAGGCCC GTCACCCGGT CCCGGATGCC GCCGGTGAGG CGGCGGCGGG CCGGATCCTG
AACCTCGTCT CGGGGTTGGG CGAGGGAGAT CTGGCGCTGT GCCTGATCTC CGGCGGAGGC
TCGGCGCTGA TGGCGGCCCC GGGCGAGGGG CTGACCCTGG CTGACAAGCA GGCCGTGAAC
AAGGCGCTCT TGTCTTGCGG GGCGGCGATC GACGAGATGA ACTGCCTGCG CAAGCATCTC
AGCCGGATCA AGGGCGGGCG GCTGACCGTG GCGGCCTGGC CTGCGCGCAC CGTGACGCTG
ACGATCTCGG ACGTTCCCGG GGATGATCCG GCGATCATCG CCTCGGGGCC GACGGTGGCG
GACCCGACCA CGGCGACCGA GGCGCGGGCG ATTGCCGCGC GCTATCACCT GGCGCTGTCG
GATGCGGTGG CGGCGTACCT GCAGACCCCG GCCGCGGAGA CGCCCGACCC GTCGCACCCA
GCCTTTGCCG CGGCCGAGTG CCACCTGATC GCCACGCCGC AGATGGCGCT GGAGGCGGCG
GCGGCCACGG CCCGGGCCGA GGGGGTCACG CCCCTGATCC TGGGCGACGC GCTGGAGGGC
GAGGCGGCGG AGCTGGGCAT CGTTCTGGCC GGTATCGCGC GGGCGGCGGT GACCCATGGT
CATCCGGTGA CGGGGCCTGC GGTGCTTTTG TCGGGGGGCG AGACGACCGT CACGGTGCGG
GGCGGTGCGG GCAGGGGCGG GCGCAATTCC GAGTGCCTGC TGAGCTTCGG GCTGCATGCG
CCGGAGGGGG TGTCGGCCAT TGCCTGCGAC ACCGACGGGA TCGACGGGTC CGAGGACAAC
GCAGGCGCGC TCTGGGTGCC GCGCGTGGCA GCCCACAAGG CGGAGGCGCG GAAGTATCTG
GAGGCGCATG ACGCCTATTC GTTCTTCGAG AAGGCGGGGG GGCTGGTCGT CTCCGGCCCG
ACCCACACCA ATGTCAACGA TTTCCGGGCG GTGTATATCC CCGGCTGA
|
|---|
| Protein sequence | MIADPEPFLR GLFRAAVAAA DPGLAVPNFL PAKPAGRVVV VGAGKASAKM AQAVEAAWGP
CEGIVIVPYG GALPTEGIEI VEARHPVPDA AGEAAAGRIL NLVSGLGEGD LALCLISGGG
SALMAAPGEG LTLADKQAVN KALLSCGAAI DEMNCLRKHL SRIKGGRLTV AAWPARTVTL
TISDVPGDDP AIIASGPTVA DPTTATEARA IAARYHLALS DAVAAYLQTP AAETPDPSHP
AFAAAECHLI ATPQMALEAA AATARAEGVT PLILGDALEG EAAELGIVLA GIARAAVTHG
HPVTGPAVLL SGGETTVTVR GGAGRGGRNS ECLLSFGLHA PEGVSAIACD TDGIDGSEDN
AGALWVPRVA AHKAEARKYL EAHDAYSFFE KAGGLVVSGP THTNVNDFRA VYIPG
|
|---|
| |