| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3020 |
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| Symbol | dapE2 |
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| ID | 5710872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3189351 |
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| End bp | 3190646 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641268947 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_001534354 |
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| Protein GI | 159045560 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01910] acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.425319 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGACG AAACCTCCCT GACCGATGCG GTGAGCGCCC GGCGCGCCGA TCTGGTGGCG
CTGACCCGGG ATCTGATCCG GATCCCGACC CTGAACCCGC CTGGCCGGCA CTATCACGAC
ATCTGTGCCT TTCTGGAGGC ACGACTCGCG CCTCTGGGGT TCCGGTGCGA GCTGGTGCGC
GCCACGGGTG CCCCCGCCGA CAGCGAACGC TACCCCCGCT GGAACCTCGT GGCACGCTAC
GAGGGCGGGG GCCCGGGCGA CTGCGTGCAT TTCAATTCGC ACCATGACGT GGTGGAGGTG
GGCCATGGCT GGACCATGGA CCCGTTCGGC GGGGAGGTGC GGGACGGCCG CGTCTATGGC
CGCGGGGCCT GCGACATGAA GGGCGGGCTG GCCGCCTCGG TCATCGCGGC GGAGGCGTTC
ATCGCCACCC ACCCGGAGTT TTCCGGCGCC ATCGAGATCA GTGCCACCGC GGACGAGGAA
TCGGGCGGCT TCGGCGGGGT GGCGTACCTC GCTGAACAGG GCTGGTTCTC GCCTGAGCGT
GTGCAGCATG TGATCATCCC CGAGCCGCTC AACAAGGACC GCATCTGCCT CGGCCATCGC
GGCGTCTGGT GGGCGGAGGT CGAGACCAAG GGCCGGATCG CCCATGGCTC CATGCCGTTT
CTGGGCGACA GCGCGATCCG CCACATGGGC GCGGTGCTGC ACGAGATCGA GACGGTGCTC
TATCCCCTGC TCGCCACCAA GCGCACCAAG ATGCCCGTGG TGCCCGAGGG CGCGCGACAG
TCCACCCTGA ACATCAATTC TGTCCATGGC GGCGAACCGG AGCAGGACGC GGATTACACC
GGCCTGCCCG CGCCCTGCGT CGCGGACCGC TGCCGGATCG TGCTCGATCG GCGGTTTTTG
ATCGAAGAGG ACATCACGGA GGTGAAGGCC GAGATCACGG CGCTGCTGGA GCGGGTGAAG
GCCACCCGAC CCAGTTTCGA GTACGAGATC CGCGAGCTTT TCGAGGTGCA GCCCACCATG
GCGGACCGGG ACGCGCCCGT GGTCCGCTCG GTCGCGGCGT CCATCGAGCG GGTGCTGGCG
CGGCAGCCGG ATTACGTGGT CAGCCCGGGC ACCTATGACC AGAAACATAT CGACCGGATC
GGGCGGCTGA AGAACTGCAT CGCGTATGGG CCGGGGATCC TCGACCTGGC CCACCAGCCG
GACGAATGGG TGGGGATCGA CGACATGGTC GACAGCGCCA AGGTGATGGC CCTGACGCTG
CAGGACCTGC TTGTGGTGCC GCAGCCGGGT TCGTAA
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| Protein sequence | MPDETSLTDA VSARRADLVA LTRDLIRIPT LNPPGRHYHD ICAFLEARLA PLGFRCELVR
ATGAPADSER YPRWNLVARY EGGGPGDCVH FNSHHDVVEV GHGWTMDPFG GEVRDGRVYG
RGACDMKGGL AASVIAAEAF IATHPEFSGA IEISATADEE SGGFGGVAYL AEQGWFSPER
VQHVIIPEPL NKDRICLGHR GVWWAEVETK GRIAHGSMPF LGDSAIRHMG AVLHEIETVL
YPLLATKRTK MPVVPEGARQ STLNINSVHG GEPEQDADYT GLPAPCVADR CRIVLDRRFL
IEEDITEVKA EITALLERVK ATRPSFEYEI RELFEVQPTM ADRDAPVVRS VAASIERVLA
RQPDYVVSPG TYDQKHIDRI GRLKNCIAYG PGILDLAHQP DEWVGIDDMV DSAKVMALTL
QDLLVVPQPG S
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