| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2981 |
|---|
| Symbol | |
|---|
| ID | 5710832 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 3147482 |
|---|
| End bp | 3148744 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641268907 |
|---|
| Product | putative molydopterin binding oxidoreductase |
|---|
| Protein accession | YP_001534315 |
|---|
| Protein GI | 159045521 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2041] Sulfite oxidase and related enzymes |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAACC ACAGCCACAC AGACACCCCC GCCGATGCGG GCCCACAGGA CGCGCCGATC
CGCAAGGACC GGCGCCGCTT CCTGCGGACC GCGGGGCTGG CCACCGCGGG CGCGGTCGCG
GGCCTGACCA TCCCGTTCGA GCGGCACATG CCCAAGGGGA TGACCCTGGC CGCCTTCGCC
GATGACAGCC CGCTTGCCGG CAAGGACGGG CTGACCCTGC TGGGCGACCG CCCGGTGAAC
GCGGAGACGC CCGCGCATCT GCTCGACGAC GCCATCACGC CAACCGAGCG CCACTTCATT
CGCAACAACG GCCTCTTGCC CGACAGCACC TCGCCCGAGG GCTGGACCCT GACCGTGGAC
GGCTTCGTCG ACAATCCGAT GACCATGACC ATCGACGATC TGCGCAACAA TTTCGAGGTC
GTCACCCGTG CCCTGCACAT CGAATGCGGC GGCAACGGCC GGGCGGCCTT CGATCCGCCC
GCGCGCGGCA ACCAGTGGAC CGTGGGCGCG GTTGGATGCT CGGAATGGAC CGGCGTGCGG
CTCAAGGACG TGCTGGAGGC TGCGGGCGTC CAGGACGCCG CCGTCTATAC CGGCCACGAG
GGCGCTGACA TCCACCTGTC GGGCGATCCG GACAAGTTCC CCCTCTCGCG CGGCATCCCG
ATCGAGAAGG CGCTGGACGA AACCGTGCTG ATCGCCTTCG AGATGAACGG CGAGGCGCTG
CACCCGATGA ACGGCGCGCC TTTGCGGCTG GTGGTGCCGG GCTGGCCGGG CTCGTGCTCG
CAGAAATGGC TGACCCGGAT CTGGGTCCGC GACCAGGAGC ATGACGGCGA GAAGATGGGC
GGCCAGTCCT ACCGCGTGCC CGCCTATCCG GTCGCCCCGG GCACCGATGT GCCGAACGAG
GACATGGTCG TGATGGGCGC GATGCCGGTG AAATCGCTGA TCACCTTTCC CATGAACGGC
GCGGAGTCGG GCATGGAAAC CGAGGTGCGC GGCCATGCCT GGGTCGGCGA CCGCACCATC
GAGCGGCTCG AGGTGTCCAT CGACTTCGGC GCGACCTGGG CCGAGGCCGA TCTCGACGCG
CCGGTGAACC CGGGCGCCTG GCAGAACTGG CGCACATCGG TCAGCTTCCC TCAGGCAGGC
TATTACGAGG TCTGGGCCCG CGCCACCGAC AGCGAGGGCG TCTCGCAACC CCACGCCATT
GCCTGGAACC CCCGCGGCTA CAACAACAAC AGCCTGCACC GCGTCGGCCT GATGGTCAGC
TGA
|
|---|
| Protein sequence | MDNHSHTDTP ADAGPQDAPI RKDRRRFLRT AGLATAGAVA GLTIPFERHM PKGMTLAAFA
DDSPLAGKDG LTLLGDRPVN AETPAHLLDD AITPTERHFI RNNGLLPDST SPEGWTLTVD
GFVDNPMTMT IDDLRNNFEV VTRALHIECG GNGRAAFDPP ARGNQWTVGA VGCSEWTGVR
LKDVLEAAGV QDAAVYTGHE GADIHLSGDP DKFPLSRGIP IEKALDETVL IAFEMNGEAL
HPMNGAPLRL VVPGWPGSCS QKWLTRIWVR DQEHDGEKMG GQSYRVPAYP VAPGTDVPNE
DMVVMGAMPV KSLITFPMNG AESGMETEVR GHAWVGDRTI ERLEVSIDFG ATWAEADLDA
PVNPGAWQNW RTSVSFPQAG YYEVWARATD SEGVSQPHAI AWNPRGYNNN SLHRVGLMVS
|
|---|
| |