| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2908 |
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| Symbol | rluE |
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| ID | 5710759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3066582 |
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| End bp | 3067118 |
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| Gene Length | 537 bp |
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| Protein Length | 178 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641268834 |
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| Product | ribosomal large subunit pseudouridine synthase E |
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| Protein accession | YP_001534242 |
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| Protein GI | 159045448 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.208535 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.739458 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTGATCG CCTTCAACAA GCCCATGAAT GTGTTGTCGC AATTCACGTC CGAGGGGAAG
TGGCGCGGGT TGAAGGACTG GATCGATGTG CCGGGCGTCT ATGCCGCCGG GCGGCTCGAC
CGGGATAGCG AGGGCTTGCT GTTGCTGACC GATGACGGGC GCCTGCAGGC GCGGATCACC
GACCCGCGGG CGAAGATGCC CAAGACCTAC TATGCGCTGG TGGAAGGCCG CCCGAGCCAA
GACGCGATCA ACCGTCTGTG CGAGGGGGTC AGTCTCAAGG ACGGGCCGAC GCGGCCCGCC
AAGGTCGCCG CCGTGCCCGC GCCGGACTGG CTCTGGCCGC GCGACCCGCC CGTGCGGCTG
CGCAAGACCG TGCCCGATGC CTGGCTGCGC CTGACCATCA CCGAGGGCCG CAACCGGCAG
GTGCGGCGCA TGTGTGCCGC CGTGGGCCTG CCCTGCCTGC GCCTGATCCG CACGCAGATC
GGGGATTGGA CCCTCGACGG GCTGGCCCCG GGGCAGTGGC GCCGGATCGC CCCCTGA
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| Protein sequence | MLIAFNKPMN VLSQFTSEGK WRGLKDWIDV PGVYAAGRLD RDSEGLLLLT DDGRLQARIT
DPRAKMPKTY YALVEGRPSQ DAINRLCEGV SLKDGPTRPA KVAAVPAPDW LWPRDPPVRL
RKTVPDAWLR LTITEGRNRQ VRRMCAAVGL PCLRLIRTQI GDWTLDGLAP GQWRRIAP
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