| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2886 |
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| Symbol | lpd |
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| ID | 5710737 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3041719 |
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| End bp | 3043113 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641268812 |
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| Product | dihydrolipoyl dehydrogenase |
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| Protein accession | YP_001534220 |
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| Protein GI | 159045426 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
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| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0945112 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.240271 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAAGCT ATGACGTTAT CATCATCGGC TCCGGCCCCG GCGGCTATGT CGGCGCGATC
CGCTGCGCGC AGCTGGGCCT CAAGACTGCC TGCGTGGAAG GGCGCGACAC CCTGGGCGGC
ACCTGCCTGA ACGTGGGCTG CATCCCGTCC AAGGCGCTGC TCCATGCTTC CCACCAAGTC
CACGAGGCCG AGCACAACTT CGAGAAGATG GGCATCAAGG TGCCCGCGCC GAAAATCGAC
TGGAAAACCA TGCTGGCCTA CAAGGACGAC GTGATCGGCC AGAACACCAA GGGCATCGAG
TTCCTGTTCA AGAAGAACAA GGTCGACTGG CTGAAGGGCT GGGCCTCGAT CCCCGAGGCG
GGCAAGGTCA AGGTTGGCGA CGAGACCCAC GAGGCCAAGC ACATCATCAT TGCGTCTGGC
TCCGAGCCTG CCTCGATCCC CGGCGCGGAG GTCGAGATCG ACGAAAAGGT CGTCGTTACC
TCCACCGGCG CGCTGGAGTT GGGCAAGATC CCCAAGCGCA TGGTCGTGGT CGGCGGCGGC
GTGATCGGGC TGGAGCTTGG CTCGGTCTAT GCGCGGCTCG GCACCGAGGT CTCGGTGATC
GAGTTCATGG ACGGGATCAC CCCGGGCCAG GACCTCGAGG TTGCCCGCCA GTTCCAGAAG
ATCCTCACCA AGCAGGGGCT GAAATTCATC ACCGGCGCTG CAGTGCAGAA AGTGGCCGCG
ACCAAGAGCA AGGCCAAGGT CACCTACAAG ATGCGCAAGG ATGACAGCGA GGATAGCCTT
GAAGCAGACA TCGTGCTCGT CTCCACCGGG CGTAAACCGT TCACCGAGGG GCTCGGGCTC
GACGCCCTGG GGGTGAAGAT GACCGAACGG GGGCAGATCG CCACCGACGG CAGCTACCGC
ACGAATGTGC CCGGGGTCTA TGCGATCGGA GACGTGATCG AGGGGCCGAT GCTGGCCCAC
AAGGCCGAGG ACGAGGGCAT GGCCGTGGCC GAGATGATCG CCGGGCAGCA CCCCCATGTG
AATTACGGCG TGATCCCCGG GGTGATCTAC ACCCATCCCG AGGTCGCCAG CGTCGGCAAG
ACCGAGGAAC AACTCAAGGC CGAGGGCGTC GCCTACAAGG TGGGCAAGTT CTCCTTCATG
GGCAACGGTC GGGCGAAGGC CAATTTCGCC GCCGACGGGT TCGTCAAGCT GCTGGCAGAC
AAGGCAACCG ACCGGATCCT CGGCGCCCAT GTGATCGGCC CCATGGCGGG CGACCTGATC
CACGAGGTCT GCGTCGCGAT GGAATTCGGG GCGGCGGCCG AGGACCTGGC CCGCACCTGC
CACGCGCACC CGACCTATTC CGAGGCCATG CGCGAAGCGG CCCTGGCCTG CGGCGACGGG
GCGATCCACG CCTGA
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| Protein sequence | MASYDVIIIG SGPGGYVGAI RCAQLGLKTA CVEGRDTLGG TCLNVGCIPS KALLHASHQV
HEAEHNFEKM GIKVPAPKID WKTMLAYKDD VIGQNTKGIE FLFKKNKVDW LKGWASIPEA
GKVKVGDETH EAKHIIIASG SEPASIPGAE VEIDEKVVVT STGALELGKI PKRMVVVGGG
VIGLELGSVY ARLGTEVSVI EFMDGITPGQ DLEVARQFQK ILTKQGLKFI TGAAVQKVAA
TKSKAKVTYK MRKDDSEDSL EADIVLVSTG RKPFTEGLGL DALGVKMTER GQIATDGSYR
TNVPGVYAIG DVIEGPMLAH KAEDEGMAVA EMIAGQHPHV NYGVIPGVIY THPEVASVGK
TEEQLKAEGV AYKVGKFSFM GNGRAKANFA ADGFVKLLAD KATDRILGAH VIGPMAGDLI
HEVCVAMEFG AAAEDLARTC HAHPTYSEAM REAALACGDG AIHA
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