Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_2882 |
Symbol | sucD1 |
ID | 5710733 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 3035436 |
End bp | 3036317 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641268808 |
Product | succinyl-CoA ligase [ADP-forming] subunit alpha |
Protein accession | YP_001534216 |
Protein GI | 159045422 |
COG category | [C] Energy production and conversion |
COG ID | [COG0074] Succinyl-CoA synthetase, alpha subunit |
TIGRFAM ID | [TIGR01019] succinyl-CoA synthetase, alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGTAC TTATCGACGA AAACACCAAG GTTATCTGCC AAGGCTTCAC CGGCAGCCAA GGCACCTTCC ATTCCGAGCA GGCGATCGCC TACGGCACCA AGATGGTCGG CGGGGTGACC CCGGGCAAGG GCGGCCAGAC CCACCTGAAC CTGCCGGTGT TCAACTCGGT CCACGAGGCC AAGGCCGTGA CCGAGGCGAA TGCCACCGTG ATCTATGTCC CGCCGCCCTT CGCCGCCGAC TCGATCCTGG AGGCGATCGA TGCCGAAATG GAAGTGATCG TCTGCATCAC CGAAGGTATC CCGGTGCTGG ACATGATGAA GGTCAAGCGC GCGCTCGAAG GCTCCGCCAG CCGCCTGATC GGGCCGAACT GCCCCGGTGT GATCACGCCG GATGCCTGCA AGATCGGCAT CATGCCCGGC CATATCCACA AGCGCGGCAC CGTGGGCGTG GTCTCGCGCT CCGGCACGTT GACTTACGAG GCGGTGAAAC AGACCACCGA CGTGGGGCTG GGCCAGTCCA CCTGCGTCGG CATCGGGGGC GACCCGATCA AGGGGACCGA GCATATCGAC GTGCTGGAAT GGTTCCTTGC CGATGACGAG ACCGAGAGCA TCATCATGAT CGGCGAGATC GGTGGCTCCG CCGAGGAAGA GGCCGCGCAA TTCCTCGCCG ACGAGAAGAA GCGCGGCCGC TGGAAGCCCA CCGCGGGCTT CATCGCGGGC CGCACGGCCC CGCCGGGTCG CCGCATGGGC CATGCAGGCG CAATCGTCGC CGGCGGCAAG GGCGGCGCCG AGGACAAGAT CGAAGCCATG CAGAGCGCGG GCATCGTGGT GGCAGAGAGC CCGGCGGGCC TAGGCGAAGC CGTGCTCAAG GCGATCGGCT GA
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Protein sequence | MAVLIDENTK VICQGFTGSQ GTFHSEQAIA YGTKMVGGVT PGKGGQTHLN LPVFNSVHEA KAVTEANATV IYVPPPFAAD SILEAIDAEM EVIVCITEGI PVLDMMKVKR ALEGSASRLI GPNCPGVITP DACKIGIMPG HIHKRGTVGV VSRSGTLTYE AVKQTTDVGL GQSTCVGIGG DPIKGTEHID VLEWFLADDE TESIIMIGEI GGSAEEEAAQ FLADEKKRGR WKPTAGFIAG RTAPPGRRMG HAGAIVAGGK GGAEDKIEAM QSAGIVVAES PAGLGEAVLK AIG
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