Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_2876 |
Symbol | mdh |
ID | 5710727 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 3029964 |
End bp | 3030926 |
Gene Length | 963 bp |
Protein Length | 320 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641268802 |
Product | malate dehydrogenase |
Protein accession | YP_001534210 |
Protein GI | 159045416 |
COG category | [C] Energy production and conversion |
COG ID | [COG0039] Malate/lactate dehydrogenases |
TIGRFAM ID | [TIGR01763] malate dehydrogenase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCCGAC CCAAGATCGC CCTTATCGGC GCAGGTCAGA TCGGTGGCAC CCTTGCCCAC CTCGTCGCAC TCAAGGAACT CGGGGACGTC GTGTTGTTCG ACATCGCGGA CGGCACCCCC CAGGGCAAGG CACTGGATAT CGCCGAAAGC GGCCCGGTGG AGCGTTTCGA CGCCAGCCTG AAGGGCACCA CGGATTACGC CGACATTGCG GGCGCGGATG TCTGCATCGT CACCGCCGGT GTGCCGCGCA AGCCGGGCAT GTCGCGCGAT GACCTGTTGG GCATCAACCT CAAGGTGATG AAATCCGTGG GCGAGGGCAT CGCGGCCAAC GCGCCGGATG CCTTCGTGAT CTGCATCACC AACCCGCTGG ATGCGATGGT CTGGGCGTTG CAGCAATTCT CGGGCCTGCC CAAGGAGAAG GTCGTCGGCA TGGCCGGTGT GCTGGACAGC GCGCGGTTCC GCCACTTCCT GGCCGAGGAA TTCAATGTCT CGATGAAGGA CGTGACCGCC TTCGTGCTGG GCGGGCATGG CGATACCATG GTGCCGCTGA CACGCTATTC CACCGTGGCG GGCATTCCGT TGCCGGACCT GGTGGAGATG GGCTGGACCA GCCAGGAGAA ACTCGACGCG ATTGTGCAGC GCACCCGCGA TGGCGGCGCC GAGATTGTCG GCCTGCTCAA GACCGGCTCC GCCTTCTATG CTCCGGCCGC TTCGGCGGTG GAGATGGCGG AAGCCTATCT CAAGGACCAG AAGCGCCTGC TGCCTTGTGC GGCTTATTGC GACGGCGAGT TCGGCCTGAA CGACATGTAT GTCGGCGTGC CGACCATCAT CGGGGCCGGC GGTATCGAGA AGGTCGTCGA CATCAAGCTT GGCAAGGACG AGCAGGCGAT GTTCGACAAC TCCGTCAACG CGGTGAAGGG CCTGATGGAA GCCTGCAAGG GCATCGACGA CTCGCTGGTC TGA
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Protein sequence | MARPKIALIG AGQIGGTLAH LVALKELGDV VLFDIADGTP QGKALDIAES GPVERFDASL KGTTDYADIA GADVCIVTAG VPRKPGMSRD DLLGINLKVM KSVGEGIAAN APDAFVICIT NPLDAMVWAL QQFSGLPKEK VVGMAGVLDS ARFRHFLAEE FNVSMKDVTA FVLGGHGDTM VPLTRYSTVA GIPLPDLVEM GWTSQEKLDA IVQRTRDGGA EIVGLLKTGS AFYAPAASAV EMAEAYLKDQ KRLLPCAAYC DGEFGLNDMY VGVPTIIGAG GIEKVVDIKL GKDEQAMFDN SVNAVKGLME ACKGIDDSLV
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