Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_2865 |
Symbol | sdhA |
ID | 5710716 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 3021696 |
End bp | 3023498 |
Gene Length | 1803 bp |
Protein Length | 600 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641268791 |
Product | succinate dehydrogenase flavoprotein subunit |
Protein accession | YP_001534199 |
Protein GI | 159045405 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup [TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGCTT ACGAATACGA GACGCATAAC TATGACGTCG TGGTCGTCGG GGCCGGTGGC GCGGGCCTGC GCGCGACCCT CGGCATGGCC GAGCAGGGGC TGCGCACCGC CTGCATCTCC AAGGTCTTTC CGACCCGCTC GCACACCGTG GCGGCCCAGG GCGGTATCGC CGCCTCGCTG TCCAACATGG GCCCCGACCA TTGGCAGTGG CACATGTACG ACACCGTCAA GGGCTCCGAC TGGCTGGGCG ATACCGACGC CATGGAATAC CTCGCCCGCG AGGCGCCCAA GGCGGTGTAC GAGCTGGAAC ATTACGGCGT ACCGTTCTCG CGCACCGAAG AGGGCAAGAT CTACCAGCGG CCCTTCGGCG GCCATACCAC CGAGTTCGGC GAAGGCCCCC CGGTGCAGCG CACCTGCGCC GCCGCCGACC GCACGGGCCA TGCGATCCTG CACACGCTCT ACGGCCAGTC GCTCAAGAAC AATGCCGAGT TCTTCATCGA GTATTTCGCC ATCGACCTGA TCATGTCCGA GGACGGGCAG TGCCAGGGCG TCGTCTGCTG GAAACTCGAT GACGGCACCA TCCACGTGTT CAACGCCAAG ATGACAGTGC TGGCCACGGG CGGCTACGGG CGCGCCTATT TCTCGGCCAC TTCCGCCCAT ACCTGCACCG GCGACGGCGG CGGCATGGTC GCGCGCCAGG GGCTGCCGCT CCAGGACATG GAATTCGTGC AATTCCACCC CACCGGCATC TACGGCGCGG GGTGTCTGAT CACCGAGGGC GCCCGCGGCG AGGGCGGCTA CCTGACCAAC TCCGAGGGCG AGCGGTTCAT GGAGCGCTAT GCGCCCACCT ACAAGGATCT CGCGTCGCGC GACGTGGTCA GCCGCTGCAT GACCATGGAG ATCCGCGAGG GCCGCGGCGT CGGCCCCGAC GGCGACCATA TCCACCTGCA CCTCAACCAC CTGCCGCCGG AAACCCTGGC CCTGCGCCTG CCGGGTATCT CGGAGAGCGC GCGCATCTTC GCCGGGGTGG ACGTCAACAA GGAGCCGATC CCGGTCCTGC CGACGGTCCA TTACAACATG GGCGGTATCC CCACGAACTA CTGGGGCGAG GTGCTGAACC CCACCGCCGA GGATCCCGAC CGCATCGCGC CGGGCCTGAT GGCCGTGGGC GAGGCGGGCT GTGCCTCGGT GCACGGGGCC AACCGGCTCG GGTCCAACTC CCTGATCGAC CTTGTGGTCT TCGGCCGGGC GGCGGCGATC AAGGCCGGGC AGGTCGTGGA CCCGACCGTG TCCAATCCGA CCCTGAACCA GGCCTCCATC GACGCCGCAC TCGCGCGCTT CGACGGGCTG CGCCACGCCA AGGGCAACGT GTCGACCGCC GAGCTGCGCC TCGAGATGCA GAAGACCATG CAGGCCGACG CCGCCGTGTT CCGCACCGAC AAGACCCTCG CCGAAGGGGT CCAGAAGATG TACGGCGTCG CGGGCAAGGT GGACGACATC AAGGTCACCG ACCGCTCGCT GGTGTGGAAC TCCGACCTGA TGGAGACGCT GGAGCTGACC AACCTGATGC CCAACGCACT GGCCACCATC GTGTCCGCCG AGGCCCGCAA GGAATCCCGC GGCGCCCACG CCCACGAGGA TTACGCCGAC CGCGACGACG AGAACTGGCG CAAGCACACG CTGGCCTACG TGAACGGCAA GGTCGACCTC GACTACCGCC CGGTCCACCT CAACCCGCTG CTGGGCCACA ACGAGGGCGG CATCGACCTC AAGAAAATCG CACCCAAGGC GCGGGTGTAT TAA
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Protein sequence | MSAYEYETHN YDVVVVGAGG AGLRATLGMA EQGLRTACIS KVFPTRSHTV AAQGGIAASL SNMGPDHWQW HMYDTVKGSD WLGDTDAMEY LAREAPKAVY ELEHYGVPFS RTEEGKIYQR PFGGHTTEFG EGPPVQRTCA AADRTGHAIL HTLYGQSLKN NAEFFIEYFA IDLIMSEDGQ CQGVVCWKLD DGTIHVFNAK MTVLATGGYG RAYFSATSAH TCTGDGGGMV ARQGLPLQDM EFVQFHPTGI YGAGCLITEG ARGEGGYLTN SEGERFMERY APTYKDLASR DVVSRCMTME IREGRGVGPD GDHIHLHLNH LPPETLALRL PGISESARIF AGVDVNKEPI PVLPTVHYNM GGIPTNYWGE VLNPTAEDPD RIAPGLMAVG EAGCASVHGA NRLGSNSLID LVVFGRAAAI KAGQVVDPTV SNPTLNQASI DAALARFDGL RHAKGNVSTA ELRLEMQKTM QADAAVFRTD KTLAEGVQKM YGVAGKVDDI KVTDRSLVWN SDLMETLELT NLMPNALATI VSAEARKESR GAHAHEDYAD RDDENWRKHT LAYVNGKVDL DYRPVHLNPL LGHNEGGIDL KKIAPKARVY
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