Gene Dshi_2802 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_2802 
Symbol 
ID5713702 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp2960490 
End bp2961767 
Gene Length1278 bp 
Protein Length425 aa 
Translation table11 
GC content66% 
IMG OID641268728 
Productoxidoreductase 
Protein accessionYP_001534136 
Protein GI159045342 
COG category[R] General function prediction only 
COG ID[COG2041] Sulfite oxidase and related enzymes 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.207777 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACAT CAAACCCCTC TGATCCAGGA CGCCGCGGGT TCCTCAAAGG CGCCGCCGCC 
GTCACCGCCG GGGCCGCTAC CGCCGGGGCC GCCCGCGCCG CGGACGACCC GCTGATCACC
GAGGTGCAGC CCTGGGCGCA GAGCTTCGGC GACGGCGTGG ACGCCACCCC CTACGGGATG
CCCATCGAAT ACGAGAGCGA CGTGGTCCGC CGCAATGTCG AATGGCTGAC CGCCGACACG
ATCAGCTCGA TCAACTTCAC CCCGATCCAT GCCCTCGACG GCACGATCAC CCCCCAGGGT
TGCGCGTTCG AGCGGCACCA TTCCGGCGCC ATCGACCTGC CCAAGGAAGA CTACCGGCTG
ATGATCAACG GGCTGGTGGA CACCCCCCTC GTGTTCACCT ACGCCGATCT CGAACGCTTC
CCGCGCGAAA ACCACGTCTA TTTCTGCGAA TGCGCCGCGA ACACGGGCAT GGAATGGGCC
GGCGCGCAGC TCAACGGCGC GCAGTTCACC CATGGCATGA TCCACAACAT GGAATATTCC
GGCATCCCGC TCCGCACCCT GCTGAACGAG GCCGGACTCG ATGCGGCCGG GGATCTCGCC
GACAAATGGG TCTTCGTCGA AGGCGCCGAT GCCTCGTCCA ACGGCCGCTC CATCCCCATG
GTCAAGGCGC TCGACGACGT GCTCGTCGCG TTCAAGGCCA ATGGCGAGGC GCTGCGCAAG
GAACACGGCT ACCCGGTGCG CCTGGTGGTG CCGGGCTGGG AGGGCAACAT GTGGGTCAAA
TGGCTTCGCC GGGTCGAGGT GATGGACGGC CCCGTGGAAA GCCGCGAGGA AACCAGCAAA
TACACCGACG TGCTCGAAGA CGGCACCGCC CGCAAATGGA CATGGGAGAT GGACGCGAAA
TCCGTCGTCA CCTCCCCCAG CCCGCAAGCC CCGATCACCC ACGGCAAGGG GCCGCTGGTG
ATCACCGGGC TGGCCTGGTC CGGCCGCGGG TCCATCACCC GCGTCGATGT CAGCCTCGAT
GGCGGCAAGA ACTGGCAAGA GGCGCGGCTC GCCGCCCCGG GCACCGACAA GGCGCTGACC
CGGTTCTATC TCGACCACGA CTGGCAGGGC GAAGAAATGC TGCTGCAATC GCGCGCCCAT
GACAGCACCG GCTACGTCCA GCCCACCAAG AACCAGCTGC GCGAGATGCG CGGGCTGAAC
TCGATCTACC ACAACAACGG CATCCAGACC TGGTGGGTGC GCGAAACCGG GGAGGCAGAG
AATGTCGAGG TTTCCTAA
 
Protein sequence
MSTSNPSDPG RRGFLKGAAA VTAGAATAGA ARAADDPLIT EVQPWAQSFG DGVDATPYGM 
PIEYESDVVR RNVEWLTADT ISSINFTPIH ALDGTITPQG CAFERHHSGA IDLPKEDYRL
MINGLVDTPL VFTYADLERF PRENHVYFCE CAANTGMEWA GAQLNGAQFT HGMIHNMEYS
GIPLRTLLNE AGLDAAGDLA DKWVFVEGAD ASSNGRSIPM VKALDDVLVA FKANGEALRK
EHGYPVRLVV PGWEGNMWVK WLRRVEVMDG PVESREETSK YTDVLEDGTA RKWTWEMDAK
SVVTSPSPQA PITHGKGPLV ITGLAWSGRG SITRVDVSLD GGKNWQEARL AAPGTDKALT
RFYLDHDWQG EEMLLQSRAH DSTGYVQPTK NQLREMRGLN SIYHNNGIQT WWVRETGEAE
NVEVS