| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2800 |
|---|
| Symbol | |
|---|
| ID | 5713700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2958766 |
|---|
| End bp | 2959473 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641268726 |
|---|
| Product | cytochrome c |
|---|
| Protein accession | YP_001534134 |
|---|
| Protein GI | 159045340 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2863] Cytochrome c553
[COG3474] Cytochrome c2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.318955 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGGTA AGCTGACACC CCTGCTGTGG GCGGCGGCGC TGGTCGGGCT GACCGGTGCC
GCCCCCGCGG ACGAAATCGG TGACCCGGAG CGCGGCGCGC AACTCTTTCG CCAATGCGCA
AGCTGCCACC AGATCGGCGA CGGCGCCGAA AGCCGGGTGG GCCCTCACCT GAACGAGATC
TACGGTCGCC GCGCCGGCAG CATCGAACGG TTCAGCTATT CCGACGGGAT GCTGCGCATG
GGGGCGGACG GGCTGATCTG GGATCTGCGC ACGCTCGACG CCTATATCGC CAACCCCCGC
GCGCTGGTAT CGGGCACCCG GATGAGCTAC CGCGGCATGC CGGAGGCGCA GGACCGCGCC
GACCTTCTGG CTTACATGCG CGACTTCACC GCCAGTCCCG CCGACATCCC CGAGGCCGAA
CCGACAGCCC TGCCGTCGGT GCCCGAGTTG CCGCCGGATG TGCTGGCGCT GCAAGGGGAT
GCGGAGTGGG GGGCCTATCT TTCGTCCGAA TGCACCTCCT GTCACCAGAT TGACGGGACA
GATCAGGGAA TTCCCTCCAT TACCTATTGG CCGGAAGAGG ATTTTGTGCT CGCATTGCAC
GCATACAAGA CCAAGCTGCG CCCGCATCCG GTCATGCAGA TGATCGCCGG CCGGTTGAGC
AACGAGGAGA TTGCCGCGCT CGCAGCCTTT TTCAAGGATC CTGACTAG
|
|---|
| Protein sequence | MQGKLTPLLW AAALVGLTGA APADEIGDPE RGAQLFRQCA SCHQIGDGAE SRVGPHLNEI
YGRRAGSIER FSYSDGMLRM GADGLIWDLR TLDAYIANPR ALVSGTRMSY RGMPEAQDRA
DLLAYMRDFT ASPADIPEAE PTALPSVPEL PPDVLALQGD AEWGAYLSSE CTSCHQIDGT
DQGIPSITYW PEEDFVLALH AYKTKLRPHP VMQMIAGRLS NEEIAALAAF FKDPD
|
|---|
| |