| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2790 |
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| Symbol | |
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| ID | 5713690 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2948736 |
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| End bp | 2949704 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641268716 |
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| Product | RNA pseudouridine synthase |
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| Protein accession | YP_001534124 |
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| Protein GI | 159045330 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.525633 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.683012 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGACA ACACCACTCC CCCCGGCGAC CGGATCGCCA AGGTTCTGGC CCGCGCGGGC
ATCGCCTCGC GCCGGGAGGC GGAGCGCCTG ATCGCCGAAG GGCGCGTGGC GGTGAACGGC
AAGACCGTCG ACAGCCCCGC GCTGAACGTG ACGGAGGCCG ACAAGATCAC CTTCGACGGC
ACGCCCATCG CGGAACCGGA GCCGCCGCGC CTGTGGCGGT ATCACAAGCC CGTGGGCCTG
GTGACGACCG CGAAGGACGA GAAGGGCCGG GAGACGGTGT TCGACGCCCT GCCCGCGGAC
CTGCCCCGGG TGATGAGCGT CGGGCGGCTG GACCTGAATT CCGAGGGGCT GCTGCTGCTG
ACGAACGATG GCGAGATCAA GCGGCGGCTG GAGTTGCCCA CCACGGGCTG GCTGCGGCGC
TACCGGGTGC GGGTCAAGGG CGCGCCCACG GAGGACGACC TCGCCCCCCT GCGCGCGGGG
ATCGAGGTGG AGGGCGAGCG GTTCAAGCCG ATGGAGGCGC GGCTCGACCG GCTTCAGGGG
GCCAATGCCT GGCTGACCCT GGGGCTGCGC GAGGGGCGCA ATCGCGAGAT CCGGCGCGCC
ATGGGGGCGC TGGGGCTGGT GGTGAACCGG CTGATCCGCA TCAGCTATGG CCCGTTCCGG
CTGGGCGAGT TGAAACCGGG CGAGGTCGAG GAGATCAAGG GCCGCATCCT GCGCGAGCAA
TTGGGGCTGG AGAGCCCCGA GCCGCCCGTG GGCACCGCGC AGGCCAGGCC GAAACGCGGC
CCAGGGCGCA AGCCCGGTGC AACGCCCGGT GGGAAGCCGA CGGGAAAGCC CAGTAGGGCG
CCGAATGCAC GGCCGGGTGC CAAGCCGGGC GGCAAGCCAG GTGCGAAACC GGACCCCAAG
CCAGGCGCGC GGGCCGGATC GGCCCGGCGC AAGGCCCCGG CGCGGCCGCG TCCGGAGCGG
GGCCGTTAA
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| Protein sequence | MADNTTPPGD RIAKVLARAG IASRREAERL IAEGRVAVNG KTVDSPALNV TEADKITFDG
TPIAEPEPPR LWRYHKPVGL VTTAKDEKGR ETVFDALPAD LPRVMSVGRL DLNSEGLLLL
TNDGEIKRRL ELPTTGWLRR YRVRVKGAPT EDDLAPLRAG IEVEGERFKP MEARLDRLQG
ANAWLTLGLR EGRNREIRRA MGALGLVVNR LIRISYGPFR LGELKPGEVE EIKGRILREQ
LGLESPEPPV GTAQARPKRG PGRKPGATPG GKPTGKPSRA PNARPGAKPG GKPGAKPDPK
PGARAGSARR KAPARPRPER GR
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