| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2788 |
|---|
| Symbol | |
|---|
| ID | 5713688 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 2947338 |
|---|
| End bp | 2948030 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641268714 |
|---|
| Product | UPF0173 metal-dependent hydrolase |
|---|
| Protein accession | YP_001534122 |
|---|
| Protein GI | 159045328 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2220] Predicted Zn-dependent hydrolases of the beta-lactamase fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCA CCTGGATGGG GCATGGCAGT TTCCGGATCG AGATCGCGGA TCAGGTGCTG
CTGATCGACC CGTGGATCAC CGGCAACCCG GTGTTTCCGG CGGATCGGCG TGACGCGGCG
CTGGCGGGGG CGACCCATAT CCTGATCACC CACGGGCATG GCGACCACAC CGCCGATGCC
GTGGCGCTGT CGAAGGAGCT CGGCGCGCCC ATCGTGGGGA TCTACGACCT GATGAGCTAT
TGGGCCGAGA CCGAGGGGGT CGAGACCGTG GGCTTCAACA AGGGCGGCAC GGTCATGCTG
GGCGATGTGG CGGTGACCAT GGTGAACGCG GTGCATTCCT CGTCGCTCGG CACGGATCAC
GGGCCGATGT ATGCGGGCGC CGAGGCGGGC TTCATGATCA AGGGCGAGGG CCGGACGGTC
TATGTCTCGG GCGACACGGA TGTGATGGCG GACATGAAGG TGTTCAACGA CCTGCACCAG
CCCGAGATCG GCATCCTCGC CAGCGGCGGG CATTTCACAA TGGACATGGA GCGCGCGGCC
TACGCGGCGC GGACCTTCTT CGATTTCAAG ACGGTGATCC CGTGCCACTA CAAGACCTTT
CCCCTGCTGG CGCAATCGGC CCAGCCGCTG ATCGACGGGC TGCCGGGCAC GGATGTGCGC
ACGCCGGAGG TGATGGAGAC GATCGAGCTG TGA
|
|---|
| Protein sequence | MKITWMGHGS FRIEIADQVL LIDPWITGNP VFPADRRDAA LAGATHILIT HGHGDHTADA
VALSKELGAP IVGIYDLMSY WAETEGVETV GFNKGGTVML GDVAVTMVNA VHSSSLGTDH
GPMYAGAEAG FMIKGEGRTV YVSGDTDVMA DMKVFNDLHQ PEIGILASGG HFTMDMERAA
YAARTFFDFK TVIPCHYKTF PLLAQSAQPL IDGLPGTDVR TPEVMETIEL
|
|---|
| |