Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_2696 |
Symbol | |
ID | 5713595 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 2856015 |
End bp | 2857679 |
Gene Length | 1665 bp |
Protein Length | 554 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641268621 |
Product | inner-membrane translocator |
Protein accession | YP_001534030 |
Protein GI | 159045236 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.665567 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGGCCG CGCCTCCGAG AAACCCGACC TGCGCCCCCG AGAGAGACAT GACAATCCTT CGCCTGTGCC TTGCAGTCCT GTTGACCTGC CTTGCCACGC TGACCGCCCC CGGCCCCGCC GCGGCCCAGA GCTTCGAGGA CCTCGTCGCC GACCTGCCCG AGGGGAAGTT CGCCGAGCGC AGCGCCGTAG TCGCCCGGCT TGCCGCCCTG GGCGATCCCC GGGCCGTGCC CGTGCTGGAG GTGCTGCGCG ACGGCAATCT GCATGTGCTG AAATCCAACG GCGCCGTGGT CGCCATTCGC GAGATCGCGG GCGATGACGT GGCCTACGAC GCGATCACCG GCGCGGAATA CGGCATCGTG CCCCGGCGCG GCGCCACCAA GATCCGCGTC AATAACGGCC TGCGCCGGGA CATCCGGGCG GCCATCGGCA CCCTGACCCT GCGGGCGCCG GACCCCGCCC TGCGCCTGGC CGCCGCCGAG GCCGCTTTTT CCGCGCCGGA CCCCGACCAG CTGGACCTGT TGCGCGCCGC GCGGGAGGCC GAGAACACCG GCACGGTGGC CGAGGCCCTG GACTACGCCA TCGCTGCCAC CCTGATCGCC GCCGACGCCC CCGAAGCCGA GCAGGTCGCG GCCATCGAAG TCCTGCGCGA GATGGGCAAC CAGGACGCGC TCTCGATCCT CACCCCGCTG CTGCAAGCCA CCAACCCGGT GCTGGCCCAG GCCGCCGCCG ACGCGCTCGC CGCCATCGAG GCCAATCAAC GGTTCTGGAA CATGGCGCAG AACGTGTGGT TTGGCCTCTC GCTCGGCTCG GTGCTGCTGC TGGCGGCCAT TGGGCTTGCG ATCACCTTCG GGGTGATGGG CGTGATCAAC ATGGCCCATG GGGAGCTGGT GATGATCGGC GCCTACACCA CCTTCTTCGT CCAGGAGATC ATCCGCACCT CCTTTCCGCA CCTCTTCGAC TGGTCGCTCC TGATCGCGGC CCCCCTGGCC TTCGCGGTCG CGGGCGCCGT GGGCGTCGCG ATCGAGCGGG GCTGCGTGCG CTTCCTCTAT GGCCGCCCGC TGGAGACGTT GCTGGCCACC TGGGGGATCA GCCTGATCCT GCAACAGACC GTGCGCTCGA TCTTCGGGCC GAACAACCGC GAGGTGGGCA ACCCCAGCTG GATGTCCGGC GCTTTCGAGG TGGGCCAGAT GACGATCACC TACAACCGGC TGTGGATCCT GCTCTTTGCC CTGGCGGTCT TCGCGGTGCT CCTCTTCGTG CTGAAGAAAA CCGCCATCGG TTTGCAGATG CGGGCAGTCA CGCAAAACCG CGCCATGGCG GCCAACATGG GCATCCGCAC GGGCTGGGTC GATGCCATGA CCTTCGGGCT GGGCGCGGGC ATCGCCGGGC TCGCGGGCGT GGCGCTGAGC CAGATCGACA ATGTCTCCCC GAACCTCGGG CAGAGCTACA TCGTAGACAG CTTCATGGTC GTGGTCTTCG GCGGCGCCGG GAACATCTGG GGCACGCTGG CGGCGGCCTT CAGCCTCGGG ATCGCCAACA AGTTCCTGGA GCCCTACGCG GGCGCGGTGC TGGCCAAGAT CCTGGTGCTC GTGTTCATCA TCCTCTTCAT CCAGAAGCGG CCCCGCGGGC TCTTCGCGGT GAAGGGCCGG GCGGTGGAGA ACTGA
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Protein sequence | MRAAPPRNPT CAPERDMTIL RLCLAVLLTC LATLTAPGPA AAQSFEDLVA DLPEGKFAER SAVVARLAAL GDPRAVPVLE VLRDGNLHVL KSNGAVVAIR EIAGDDVAYD AITGAEYGIV PRRGATKIRV NNGLRRDIRA AIGTLTLRAP DPALRLAAAE AAFSAPDPDQ LDLLRAAREA ENTGTVAEAL DYAIAATLIA ADAPEAEQVA AIEVLREMGN QDALSILTPL LQATNPVLAQ AAADALAAIE ANQRFWNMAQ NVWFGLSLGS VLLLAAIGLA ITFGVMGVIN MAHGELVMIG AYTTFFVQEI IRTSFPHLFD WSLLIAAPLA FAVAGAVGVA IERGCVRFLY GRPLETLLAT WGISLILQQT VRSIFGPNNR EVGNPSWMSG AFEVGQMTIT YNRLWILLFA LAVFAVLLFV LKKTAIGLQM RAVTQNRAMA ANMGIRTGWV DAMTFGLGAG IAGLAGVALS QIDNVSPNLG QSYIVDSFMV VVFGGAGNIW GTLAAAFSLG IANKFLEPYA GAVLAKILVL VFIILFIQKR PRGLFAVKGR AVEN
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