Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_2548 |
Symbol | |
ID | 5713445 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 2703739 |
End bp | 2707950 |
Gene Length | 4212 bp |
Protein Length | 1403 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641268471 |
Product | hypothetical protein |
Protein accession | YP_001533882 |
Protein GI | 159045088 |
COG category | [S] Function unknown |
COG ID | [COG5412] Phage-related protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.300555 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.511808 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGACCC ACGCCAAGAC ACGGGAGCCG AAAACCACCG GTGCCCCTGT GGCGGCGAGG GGTCGCGCCG CACCTGTTCG CCCATGTCTG GAGCCGGGGC TCATTCAGCG CGCGGCCACG CTTGGCAAGC GCGACGATGT CTATGAGCGG GAAGCGGAGC GCGTGGCGAA GGCCGTATCC AGTGGGGATC GGCCGGAACC GGTCAGCATG GCGGCCCCAA GCGGTGTCCC GCAGCGGCTG ACCGAAACGG ATGCCGAGGC CGAGCGACCT GGGGAATATC TCATCCAGCC CAGCCGCGAG GGCGCGCAAG GGGGCGAGCC GCCGCTGCGC AAGGGCTTCC TTCAACGGCT TTTGGAATTG CGGCGCGGCG GGCGGCCTCT GCCTGACACG GTGCGCAGCG AGATGGAGGC CCGGATCGGC GAGGACTTCT CCGACGTGCG CATCCATACC GGGCGGGAGG CATCGGACCT CGCCGCGGAG ATCCACGCCC GCGCCTTTAC CGTGGGGCGC GATGTGGTTT TCGCGGGCGA CAGTTTCGCA CCGGACACTT TGTCGGGTCG CCATCTGATC GCCCATGAGT TAACCCATGT GGCGCAGCAG CGGGGCCCGC GCGCTGACAG TGCCGTGGCG CAGGCCGCAC CGGGCGGACT GCAACGGGAC GTTTCGGACT ATATCCCCGA CCTGCCGGAT GTCGGCAGCA TTGTAATGGG GCTGGTGCGC GACTACGCCC CGCGGCTTGC CCCGATCCTC GACAAGGGGC CGTTCAACTG GCTGACGGAT CAACTCGCAG GCGTGTTCTC TGGCGTGATC GACAAGGTCA CGGCGCTCGA TCCGGGCCAG CATGTCACCG CCCTGGTCGA GACATTCGGC GGGATGGTGG AGAGCGCCGC CGAGATCATC GGCGCGCTCG TGACGGGCGA TTGCGGGCCG ATGATGGCGG CGCTGGGCCG GATGAAGGCC CTGGTGCTCG AGGTCGCGGG CAAGGCCTGG GACAAGACAA AGGCGTTCTT TGCCCCGGTC GGTGCGTTTT TCTCCGACCT GTGGTCTTCG GTCTCGGCGG CGGGCAGTGC CGCGATCACC TGGATCAAGG AGTTCGCTGG CGAGATCTGG ACCGGCATCG AGGAAATAGG TGCCCATATC TGGGACAAGA CCAAGACGAT CCGCGACTAC GGCATGGGCG CGTGGGATTG GCTGTCCGAG AAGCTTTTCG GGGCAAGCGA TGCCGGGAAG GCCACGGATG GAAATGGGGT CCTTGGGCTG ATCACCGACA AGGCCATGGA GGCCTGGGAC TGGGTCAAGG CCCGCACGCG ACCCGTGTGG GAGCCGGTCA ATGAGGCCAT TGAGACAGTC AACGAGTTGA TCCCGCCGGA CTTCGTTGCC GATCTCGGCG AGAAGATGAC CAGCTTCGCC GATGACGTCG AAAGCACCGC GGACGAACTG GACCAAGGCA ATTCGCTGGC CGAGAACCGC GAGGCGCTGT CAGGGGTGTT GCCGTCCCTG GACGGGATCA TCACGACTGT GCGGGGCGTG ATCGAAGGTG CGGGCAGCTT CCTGACCACC ACCATCGGCA AGGTCGCGGG CAAGGTCACA AGCTTCATGA CGAAGCTGCG CAGCAGCGAT CTGGTCTCCG GTCTTGCGAG CGCACTGGGC TGGCTTGAGA CCGCGATCGA GGATGTCTCA GGCTGGGCGG CGGACAAGGT TGGCACGCTC TTCGAGTGGT ACCTGAAGGC CTTCGATTTC CTGTCGCCCT TCGTGAAGCA GTTGATCGAG ATCGTCGGCA AGGTGGTCGA GATCGCGGTC GATATCCTTC TGTTGCCCAA ACTTCTTCTG ACCAAGGCAT GGGACCTGAT CCCCGAGTGT ATCCGGGAGC CGATCAAGAG TTTCGTGTTG GACACGGTGC TGGCGCAAGT GCCGATATTC AACCAGTTGC TCAAGATCGG TGGCCTGTGG AAGAAGGTGC AGGAGGTCGC GTTCGAGATC CTCGCCTCGA TTTTGGCCAA GGGCGATATC CTCAAGGCCG CCTGGACCTT CTTCAAGGAG ATGCTGGCGC TGATCGGCTT GCCAGCGAAA CTCGTGGTGC AGATCCTCGC AAAGGCCGCG CGGGCCTACG GGATGATCCT GCGGAACCCC ATCGGTTTTC TGATCAACCT GCTGAAGGCG ATGAAGGAGG GCTTCACCCT CTTTTTCGAC AACATCCTGA CTCACCTGAT GAACGGGGTG GTGGGGTGGC TGACCGGGGC GGTGAGCGCG GCTGGTCTGA GCTTTCCGAC CGAGCTCACT TTCCAGGCGG TGCTCGATTT CGTGCTGCAA CTGCTCGACA TCACTGTGGA GCGGGTTCTG GAGCGGCTGG AAAAGAAAAT CGGACAGGAG AAGGTCGCCA AGATCCGCAA GGCGCTCGAT TACGCCGACG GGGTCTGGGA GTTCATCCGG GTGATCGTGA CCGAAGGCGT TGGCGGGCTT TGGCGGTTCA TCCAGGAGAA GCTGTCGAAC CTGTGGTCCA TGGTGTTGCA GAGCACTATC GGCTGGGTGG TCGAGAAGAT CATCACCGAG GCCACGGTGA AGATCCTGTC CTTCCTCGAC CCTTCGGGTA TCATGGCGGT GATCAACAGT TGCATCGCGA TCTATCGGGC GATCGAGACC TTCGTACAGC AGCTCAAGGC GATGTTGCAG ATCGTCTCGA AGGTGCTGGA CGGCATCGTC GGCATTGCCA AGGGCGCCAT AGACGTGGCG GCCGGGTTCC TCGAGAAAGC CATGGCCGAC AGCCTGCCCG TCGCCATCGC ATTCCTCGCC GATCAGGTGG GGTTGGGCGA TTTGTCCGAC CGGATCAAGG AGTTCGTCGA GGGGCTGCGA GATTTGGTCA ATGGCGCCAT CGACTGGCTC ATCGACAAGG CGCTGAAGTT CGGGCAGGGG TTCTTGAAAC TGGTCGAGAG CGGCGTGGAT CTTGCCAAAG CCGGGGTCCG CAAACTGAAA GATTGGTGGA CCGCGCGGAC GGATTTCAAG ACGACGGGCG GCGAGCCGCA CAGCATTTCG ATCGAAGGCC AGGGGCGCAA TGCCAAGGTC ATCCTCCGCT CCACCCCGGT GACCTATGCG GATTGGATTG CCGACACGAG CAACTTCACC CTGGACACGC CCAAGAAGCA GAAGGCCTAT CAGGATGCCG TGGTGAAGTC CGGCGAGCTT GATGCGGCGA TCTCGGCTGC GGCCTCCAAC CCGTCATCGG CAACTCCCGA GGCTAGGGAT GCCACCCAGG GGGATCACGG TCCCAAGATA CAGGCTCTTG TCAACGAACT CGGAGACCTG ACATCCGTGT TCATGCCCAA CTCGGCAACG AAGGATGAAG AAAGCAGTCC GCCGATCTAC GGGGGCCTCT ACAAAAACAA GTACGGCACA TCGGTCACGG TCCAGCGACT GACAAACCAG GTGCCGAAAG GGGGCACAGC CGCGAGCGGG CGCGGAGACC GGTGGACCGA ACTCGCCCCT CGTGGCACCA GCCCTGGCTC GCCCGATGGT TATTATGTCC GCGGCCACCT TTTGAACCAG AAACTCGGCG GACCTGGGGC GAAGTGGGAG AACCTCACCA TTCTCACGCA GGATGCGAAC AATCGCGAGA AGGCGTCCCA CGAGAAAAAG TTCGAGAGCA AGGTAAAGGA TGCGGTGATA CCGGATGCGG GCACGATCGC GCCCAAGGCC GTCAACTTTG TCTGTACCGT GAATTACGGA CGGGAAGACC GGGTCGATCA AGCCGATCGG TTCCTGGAGA GAACGACACC CGCTGTGCGA TCCAACCGTT TGAGTATCGC GCAGACGGAA AGTATCGCGC GCATCATCCG CGCGGAGACC GACGTTCCCT TTTCCATGGA TTGCTCGGCG TTCGAGTTGA ACGACGACGG CGCGAAGAAA GCCGAGTTGG TAACCTTCCG GGTGCAGAAT CCGATCAAGA CGGATGACAA GGACTACTAC GTCAAATCCG ATACTGCCAA ACCGACGCTC AACATGAACA CGGCGAACCG CAACCAGCTC AAGCTCGTGT ATGGGATCGG CGACAAGACG GTGGACAAGT TCTTTGCAAT TCGGACTGCG CGCATGGCCA AGTCACCGCC CGAACCGTTC GAGAGTCTCG ACGATCTCAA GGCGCTCAAG TCCGGGGGGG CCGTGCTCTT CAACAAGATA CAGATCGAAG AGCTTCCCCT CACCTACAAA CTCCAATTCT GA
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Protein sequence | MLTHAKTREP KTTGAPVAAR GRAAPVRPCL EPGLIQRAAT LGKRDDVYER EAERVAKAVS SGDRPEPVSM AAPSGVPQRL TETDAEAERP GEYLIQPSRE GAQGGEPPLR KGFLQRLLEL RRGGRPLPDT VRSEMEARIG EDFSDVRIHT GREASDLAAE IHARAFTVGR DVVFAGDSFA PDTLSGRHLI AHELTHVAQQ RGPRADSAVA QAAPGGLQRD VSDYIPDLPD VGSIVMGLVR DYAPRLAPIL DKGPFNWLTD QLAGVFSGVI DKVTALDPGQ HVTALVETFG GMVESAAEII GALVTGDCGP MMAALGRMKA LVLEVAGKAW DKTKAFFAPV GAFFSDLWSS VSAAGSAAIT WIKEFAGEIW TGIEEIGAHI WDKTKTIRDY GMGAWDWLSE KLFGASDAGK ATDGNGVLGL ITDKAMEAWD WVKARTRPVW EPVNEAIETV NELIPPDFVA DLGEKMTSFA DDVESTADEL DQGNSLAENR EALSGVLPSL DGIITTVRGV IEGAGSFLTT TIGKVAGKVT SFMTKLRSSD LVSGLASALG WLETAIEDVS GWAADKVGTL FEWYLKAFDF LSPFVKQLIE IVGKVVEIAV DILLLPKLLL TKAWDLIPEC IREPIKSFVL DTVLAQVPIF NQLLKIGGLW KKVQEVAFEI LASILAKGDI LKAAWTFFKE MLALIGLPAK LVVQILAKAA RAYGMILRNP IGFLINLLKA MKEGFTLFFD NILTHLMNGV VGWLTGAVSA AGLSFPTELT FQAVLDFVLQ LLDITVERVL ERLEKKIGQE KVAKIRKALD YADGVWEFIR VIVTEGVGGL WRFIQEKLSN LWSMVLQSTI GWVVEKIITE ATVKILSFLD PSGIMAVINS CIAIYRAIET FVQQLKAMLQ IVSKVLDGIV GIAKGAIDVA AGFLEKAMAD SLPVAIAFLA DQVGLGDLSD RIKEFVEGLR DLVNGAIDWL IDKALKFGQG FLKLVESGVD LAKAGVRKLK DWWTARTDFK TTGGEPHSIS IEGQGRNAKV ILRSTPVTYA DWIADTSNFT LDTPKKQKAY QDAVVKSGEL DAAISAAASN PSSATPEARD ATQGDHGPKI QALVNELGDL TSVFMPNSAT KDEESSPPIY GGLYKNKYGT SVTVQRLTNQ VPKGGTAASG RGDRWTELAP RGTSPGSPDG YYVRGHLLNQ KLGGPGAKWE NLTILTQDAN NREKASHEKK FESKVKDAVI PDAGTIAPKA VNFVCTVNYG REDRVDQADR FLERTTPAVR SNRLSIAQTE SIARIIRAET DVPFSMDCSA FELNDDGAKK AELVTFRVQN PIKTDDKDYY VKSDTAKPTL NMNTANRNQL KLVYGIGDKT VDKFFAIRTA RMAKSPPEPF ESLDDLKALK SGGAVLFNKI QIEELPLTYK LQF
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