Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_2451 |
Symbol | murD |
ID | 5714107 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 2594434 |
End bp | 2595828 |
Gene Length | 1395 bp |
Protein Length | 464 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641268374 |
Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
Protein accession | YP_001533786 |
Protein GI | 159044992 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCCCG TGCGCGGATT TTCCGGCGAA ACCATCGCTG TGCTCGGACT GGGCCGCTCC GGCCTCGCCA CGGCCCGCGC CCTGCGCGCC GGCGGTGCCA CGCCGCTGTG CTGGGACGAC AATACCGAGG CCCGCGCCCG GGCCGAGGCC GAGGGCTTCG CCTGCGCGCC CCTCAAACAC GCCGACGCCT TCGACGGGGT CGCGGCCCTG ATCACCTCGC CGGGCATCCC CCATCTCTAC CCGACCCCGA ATCCCACGAT CGCGCTGGCC ATGTCCCTCG GCATCCCCGT GGACAACGAT ATCGGCCTGT TCTTCCGCTC CTTCGCCACG CCGGACTGGG ACGAGTTCGA CAGCCTCCCG CGGGTCATCG CGGTCACCGG CTCCAACGGC AAATCCACCA CCTCCGCGCT GATCCACCAC GTCCTGACGG CGGCGGGCCG GCCCACCCAG CTGGCCGGCA ATATCGGCCG CGGCGTGCTC GACATCGACC CGGGCGAGGA TGGCGGCATC GTCGTCTTGG AGCTGTCGAG CTACCAGACC GAGCTTGCCC GCGCCCTGAC CCCCGACATC GCGGTCTTCA CCAATCTCAG CCCCGACCAC CTGGACCGTC ACGGTGGCAT GGGTGGGTAT TTCGCGGCCA AGCGGCGGCT CTTCACCATC GGCGGGCCGG ACCGTGCGGT GATCGGCACC GACGAGCCCG AGGGCCTGTT CCTCGCCTCC CAGCTCTCCG TGGCGCCCGC CGATGACCGG GTGATCCGGG TGACCTCCGC CAAACCCTCG GGGCCCGGCT GGGTCGTTAG CGCGCGCAAG GGGTTCCTGG CCGAGCACCG CAAGGGCCGC CAGACCGGGT CCATCGACCT GCGCCCGATC CCGGGCCTGC CCGGGGCCCA TAACCACCAG AACGCCGCCT GCGCCTATGC CGCCTGCCGC AGCCTCGGCC TTGCCCCGCG CCAGATCGAG GCGGGCTTTG CCAGTTTCAA GGGGCTGCCG CACCGCAGCC AGATCGTCGG CACCGCGAAC GGCGTCACCT TCGTCAACGA CAGCAAGGCC ACCAACGTGG ACAGCGCGGC CAAGGCGCTA CAGGCTTTCG ACCGCATCCG CTGGATCGCC GGCGGACTGG AGAAGGAGGG CGGTCTCGCG GCCCTCACCC CCCATCTGGG CGGGGTCCGC AAGGCCTACC TGATCGGGCG CTCGGCGGCC GAGTTCGCCC TGGGCATTCC CGACACTCCC CACGAGGTCT GCGAGACCAT GGCCCGCGCC GTGGCCGCAG CCGTGGCCGA AGCCGAACCG GGCGATACGA TCCTGCTTGC CCCTGCCGCG GCCAGCTTCG ATCAGTACGA CAATTTCGAG CGACGCGGCG AGGACTTCAT CGCCGAGGTG GCGAAGTACT TATGA
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Protein sequence | MIPVRGFSGE TIAVLGLGRS GLATARALRA GGATPLCWDD NTEARARAEA EGFACAPLKH ADAFDGVAAL ITSPGIPHLY PTPNPTIALA MSLGIPVDND IGLFFRSFAT PDWDEFDSLP RVIAVTGSNG KSTTSALIHH VLTAAGRPTQ LAGNIGRGVL DIDPGEDGGI VVLELSSYQT ELARALTPDI AVFTNLSPDH LDRHGGMGGY FAAKRRLFTI GGPDRAVIGT DEPEGLFLAS QLSVAPADDR VIRVTSAKPS GPGWVVSARK GFLAEHRKGR QTGSIDLRPI PGLPGAHNHQ NAACAYAACR SLGLAPRQIE AGFASFKGLP HRSQIVGTAN GVTFVNDSKA TNVDSAAKAL QAFDRIRWIA GGLEKEGGLA ALTPHLGGVR KAYLIGRSAA EFALGIPDTP HEVCETMARA VAAAVAEAEP GDTILLAPAA ASFDQYDNFE RRGEDFIAEV AKYL
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