| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2327 |
|---|
| Symbol | |
|---|
| ID | 5713982 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 2458342 |
|---|
| End bp | 2459106 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641268251 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001533664 |
|---|
| Protein GI | 159044870 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02595] PEP-CTERM putative exosortase interaction domain
[TIGR03370] variant PEP-CTERM putative exosortase signal, Roseobacter type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000000000411172 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATGC GTTCATTTCT TGCCGCGACC GCCGTCACGG CCCTTCTTCC GTTCAGCGCA
ACCGTGGCCT CGGCCATCAC ACTCGATCAA CTGGTCGCGG GCTCCACGCT CACCCAGGGC
GATGTCACCT TCAGCGGCTT CAAGTTTGAT GACCGGTTCG GCACAGACAC CACTGGCGGG
CTGCCGGATC GTACCGACGC GGCCTTTCCG GGCGACCGGA GCGTCGACGC TTCAGAAATA
GGCATAACGA CATCGTCCAC GAGTTCCACG GTCTCTCTTA CCGCGACAAT CGACCCGGCC
ATCAGCATCG CCGGCGAAGG CTCCCCGACG CTCGCCCGCA TCTACGACTT CTTCTTCGAT
TTCACGGTTA CCGTCGCCGG CACCTCCGTG CGCACCCTCG ACAGCGTCGC ATTGGGGGAT
GGCGACCTGT TCGCCACGGG CAACGGTGTG AGCGAGATTA TCTTTGACAT AGCAGGAATT
AGCGGCAGAA ACGATCTCGA AATCTTCGAA GCCCCCGGTC TCGGTTTTTC TCAATCGTCC
GACACCACGA CGCTCGCGTC CGTGAAGAGC CTCGACTTCC TCGGACAGAT CGAGGGCGAC
ACGAGGGACG GCGACACGGC GGGTATCTCG ACCTTCACGA TCACCTTCGA TCTCGGTGGC
GTGGCCCCGC CGCCGCCCCA CGTGATTCCG GTCCCTGCCG GTCTTCCGCT GCTGCTGACC
GGCCTGGTCG GGCTCGGGTT GGCCCGCCGC GCACGGCGCG GCTGA
|
|---|
| Protein sequence | MKMRSFLAAT AVTALLPFSA TVASAITLDQ LVAGSTLTQG DVTFSGFKFD DRFGTDTTGG
LPDRTDAAFP GDRSVDASEI GITTSSTSST VSLTATIDPA ISIAGEGSPT LARIYDFFFD
FTVTVAGTSV RTLDSVALGD GDLFATGNGV SEIIFDIAGI SGRNDLEIFE APGLGFSQSS
DTTTLASVKS LDFLGQIEGD TRDGDTAGIS TFTITFDLGG VAPPPPHVIP VPAGLPLLLT
GLVGLGLARR ARRG
|
|---|
| |