| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2033 |
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| Symbol | |
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| ID | 5713028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2152380 |
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| End bp | 2153708 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641267957 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_001533373 |
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| Protein GI | 159044579 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.101012 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0941732 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTTGGC AGCAAATGGA CCAAACCGTC ATCCTGGGCT GGGATTTCTA TGGCCCGGTG
ATCATGTTCG TCGCCCTCGT GGCCCTTGCC GTGCCGGTCT GGGCCGCCAT CGGCGCCTCG
GCGATCCTGA TGCTTGTGTG GTCGGGCGCC CTGCCCCTGA GCCTCGTGGG CGAACGGCTG
TTCTCGGGGA TCGACGCGTT TGCCCTGACG GCGGTGCCCC TCTTCATCCT GACCGGCGAC
GCGCTTGTCC GCACGGGGTT GTCGCGCAAG TTTCTCGATG TGGCCGAGGC GCTCACGCAA
TTCGCCAAGG GCGGGTTCGG ATCGGCGACG GTGCTGGTCT GCGGGATGTT CGCGGCGATC
TCGGGCTCTG ACGCGGCGGG CGCCGCTGCC GTGGGGCGGA TGACCATCGC GCGGCTGGTC
GAGTCGGGCT ATCCGCGGCC CTATGCCTGC GCTTTGGTGG CTGCGGGGGC CTGTACCGGC
ATCCTGATCC CGCCCTCGAT CGCCTATATC ATCATCGGCC TCGTGCTGGG TATTTCGGCC
TCGACCCTGT TCCTGGCGGC CGTCATTCCG GGCCTCGCGA TCCTGGTTTC GATCCTGGTG
ACGAACATCA TCATGAACCG GCTCAACGGC TGGGAGGGCG GCGGCAATGT CTCGATGCCG
GAGTATTTCT CCCGCCTCTG GACGGCGCTG AAGTCCGGCT GGTACGCCTT CATCGTGCCC
GGCATCATCT TCTACGGCAT CTTCTCGGGG CGGATGACGC CGACAGAGGC CGGCGCGACG
GCGGTCGTGG TCACCATCGT GATGGGTTTC GTGCTGGGCA CGCTGAAGCT GAGCGATTTT
CCCGCGATGC TGGTGAGTTC GGCCAAGGTC AACGGGGTGA TCCTGCCGAT CATCGCCTTC
TCTGTGCCGC TGGCCGAAGC GCTGGCCATC ATCGGCGTGC CGCAGGGCTT CGTCGCGGTG
GCGACCGGTG TCAGCGAAGA GCCCTGGGTG CTGATCCTGA TGATGCTGGC CATTCTGGTC
GCCGCGGGCT GCGTCATGGA AACCACGCCG AACATCGTGA TCCTGGCGCC CATCCTGCTG
CCCTTGGCCG AAGAGATCGG CATGAACGAG ATCCAGTTCT GCATCATGAT GATCACCGCC
CTGGGCGTGG GCTTCATCAC GCCACCGCTG GGGCTCAACC TGTTCGTGGT GTCGGGCATA
ACAGGGGAAT CCATCCTGAA AATCGCCTAT CGGGCAGTCC CCTTCGTGTT TTTCATGCTG
CTCGTCACCC TTATGATTGC CTATATTCCG GCAATCTCCA CCGCCCTTCT TCCAGACATC
TTCAAGTAG
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| Protein sequence | MLWQQMDQTV ILGWDFYGPV IMFVALVALA VPVWAAIGAS AILMLVWSGA LPLSLVGERL
FSGIDAFALT AVPLFILTGD ALVRTGLSRK FLDVAEALTQ FAKGGFGSAT VLVCGMFAAI
SGSDAAGAAA VGRMTIARLV ESGYPRPYAC ALVAAGACTG ILIPPSIAYI IIGLVLGISA
STLFLAAVIP GLAILVSILV TNIIMNRLNG WEGGGNVSMP EYFSRLWTAL KSGWYAFIVP
GIIFYGIFSG RMTPTEAGAT AVVVTIVMGF VLGTLKLSDF PAMLVSSAKV NGVILPIIAF
SVPLAEALAI IGVPQGFVAV ATGVSEEPWV LILMMLAILV AAGCVMETTP NIVILAPILL
PLAEEIGMNE IQFCIMMITA LGVGFITPPL GLNLFVVSGI TGESILKIAY RAVPFVFFML
LVTLMIAYIP AISTALLPDI FK
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