| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2001 |
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| Symbol | |
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| ID | 5712996 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2120658 |
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| End bp | 2121902 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641267925 |
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| Product | putative xylose repressor |
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| Protein accession | YP_001533341 |
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| Protein GI | 159044547 |
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| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
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| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.244297 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.176601 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGAGG ATGCCGCGAC GCGCGACACT CCCGGATGCG GGCCCATGCT GCCCGATTCG
GGCCGCAATG CAAAACCCCT GCGTCAGGCG GTATTCGAGC ATGTGCGCGC CGCCGGGCAC
GCGCCGCGAA TGGACATCGC CCGCGCCCTC GGCATCTCGC CCGGTTCGGT CACCACGCTG
ACCTCGGACC TGATCGAGGC GGGGTTTCTC ACCGAAATCG CCGCCCCCGC CCGCGAGACC
GGGCGCGGTC GCCCGCCCGT GGCCCTCGCC GTGGTGCCCG CGGCCCGCTA CGTGCTTGGC
CTGCGCCTGT CGGACGAGAT GCACACGGTC AGCCTGTCGG ATTTTTCCGG CACCGAACTG
GCCACCGCCC ACCGCGCGAG CCAGCCGGGG CGCTATGCGG TCGAGGCGCT GCTGACCGAG
ATGGCCACCC TGATCGACGA GGTGTTGGCG GCAGCCGCCC TGCCCCGCGA CCGGGTGGCG
GCGCTCGGCG TCGGTCTGCC GGGGGCCGTC CATCACGAAA CCGGCCGCGT CGCCTGGTCG
CCGATCCTCG CCGGGCAGGA TCATGCCCTC CAGGCGATCA TCGAAGACCG CTTCGGCCTG
CCCGCGCATC TGGAGAATGA CGCCAATGTC CTGACGCTGG CCGAGCTGTG GTTCGGTGCG
GGCCGCGCGA TGCAGGACTT CGCCGTGGTC ACGATCGAAC AAGGGGTCGG CATGGGGCTG
GTGCTGAACA ACCGGTTGTT TCGCGGCGCA CAGGGGCTCG GGCTGGAGCT GGGGCACACC
AAGGTGCAGC TCGACGGGGC GCTCTGCCGC TGTGGGCAGC GCGGCTGCCT GGAGGCGTAT
CTGGCCGACT ACGCGCTGGT GCGCGAGGCC TCCACCGCGC TCGACCGCGA CCCCCGCTCG
GCCCAGACCG CCGCCGCCAT GCTGGAGAGC CTGTTCGATC AGGCCAAGGC CGGCAACGGC
GCGGCCAAGG CGATCTTTCA GCGCGCCGGG CGCTTCCTGT CGCTGGGACT GGCCAATGTG
GTGCAGCTTT TCGATCCGGA ACTCATCATT CTGAGCGGCG CGCGGATGCG CTACGACTAC
CTTTATGCCG AAGAGGTGCT CGCCGAGATG CAACGCATGA CCCTGCACCC CGCCACCCCG
CGCAGCCGGG TCGAGATCCA CGCCTGGGGC GACCAGGTCT GGGCGCGCGG GGCGACGGCG
CTGGCGCTGT CGGCGGTCAC GGACGCGCTC ATGGGGGAGA GATGA
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| Protein sequence | MPEDAATRDT PGCGPMLPDS GRNAKPLRQA VFEHVRAAGH APRMDIARAL GISPGSVTTL
TSDLIEAGFL TEIAAPARET GRGRPPVALA VVPAARYVLG LRLSDEMHTV SLSDFSGTEL
ATAHRASQPG RYAVEALLTE MATLIDEVLA AAALPRDRVA ALGVGLPGAV HHETGRVAWS
PILAGQDHAL QAIIEDRFGL PAHLENDANV LTLAELWFGA GRAMQDFAVV TIEQGVGMGL
VLNNRLFRGA QGLGLELGHT KVQLDGALCR CGQRGCLEAY LADYALVREA STALDRDPRS
AQTAAAMLES LFDQAKAGNG AAKAIFQRAG RFLSLGLANV VQLFDPELII LSGARMRYDY
LYAEEVLAEM QRMTLHPATP RSRVEIHAWG DQVWARGATA LALSAVTDAL MGER
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