| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1855 |
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| Symbol | ccmA |
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| ID | 5712847 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1935037 |
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| End bp | 1935654 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641267779 |
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| Product | cytochrome c biogenesis protein CcmA |
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| Protein accession | YP_001533198 |
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| Protein GI | 159044404 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4133] ABC-type transport system involved in cytochrome c biogenesis, ATPase component |
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| TIGRFAM ID | [TIGR01189] heme ABC exporter, ATP-binding protein CcmA |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.125429 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.876599 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAATTGC GCGTGGATAC CGTGAGCTGC CAGCGCGGCG GGCTCGTCGT GCTCGAAGGG
GTCAGCTTCG TGGTGACACC GGGGGAGGCG GTGGTGCTGC GCGGCCCGAA CGGCATCGGC
AAGACCACGC TTTTGCGTAC CATCGCCGGG TTGCAGCCGC CGGTGACCGG CACCGTGTCG
GCGCCCGAGG ACGCGATGGC CTATGCCGGG CACGCCGATG GGCTGAAGGG GCCGCTGAGC
GTGCGGCAGA ACCTGGAATT CTGGGCCGAA GTATACGGGC AGCGCGACAT CACCCCGGCG
CTGGAGCTTT ATGCGCTGGG GCCGCTCGCG GACCGGCAGG CGCAGGACCT GTCGGCCGGG
CAGAAGCGGC GGCTGGGGCT GGCGCGGATG ATGGTGACCG GGCGGCCGAT CTGGATCCTG
GACGAGCCGA CCGTTTCTCT GGATGTGGCC AATGTGGCGC TTTTCGGCGA GATGATCGCG
GCCCATCTGG CGGGCGGGGG CATGGCGCTG ATGGCGACCC ATATCGAGCT GGGCGTGACC
GCCACCACGC TGGATCTGGG GCCCTACAAG GCGGTGACGC CCGCCGAGGA CATGGCCACC
GACGAGGCGT TCCTGTGA
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| Protein sequence | MELRVDTVSC QRGGLVVLEG VSFVVTPGEA VVLRGPNGIG KTTLLRTIAG LQPPVTGTVS
APEDAMAYAG HADGLKGPLS VRQNLEFWAE VYGQRDITPA LELYALGPLA DRQAQDLSAG
QKRRLGLARM MVTGRPIWIL DEPTVSLDVA NVALFGEMIA AHLAGGGMAL MATHIELGVT
ATTLDLGPYK AVTPAEDMAT DEAFL
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