Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1696 |
Symbol | |
ID | 5713262 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 1764892 |
End bp | 1766529 |
Gene Length | 1638 bp |
Protein Length | 545 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641267613 |
Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
Protein accession | YP_001533039 |
Protein GI | 159044245 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.683732 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.0200577 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGAAC GCCTCTACCT CTACGACACC ACCTTGCGCG ACGGGCAGCA GACCCAGGGC GTGCAGTTCT CGACCCCCGA GAAGCAGCAG ATCGCGGCGG CGCTGGATGC GTTGGGGATC GACTTTATCG AGGGCGGCTG GCCCGGGGCG AACCCGACGG ATAGCGAGTT TTTTGCTTCT GCGCCGACCT TTGATCATGC GCGGTTTGCG GCCTTCGGCA TGACCAAGCG CGCCGGGTTC TCGGCGGAGA ATGACGATGT GCTGGCTGCG GTGCTGAATG CGGGCACGCA GGCCGTGTGC CTTGTGGGCA AGTCGCATGA GTACCACGTG ACCCGTGCGC TTGGGATTTC GCTGGCCGAG AACACCGAGA ACATCGCGCG CTCGGTTGCG CATCTGGTGG CGCAGGGGCG CGAGGCTATT TTTGATGCGG AGCATTTCTT CGACGGCTAT CTCGCGAACC CGGGCTATGC GGTGGAGACG TTGCAGGCCG CGCTGGAGGC CGGGGCGCGT TGGGTCGTGC TCTGCGACAC AAATGGCGGG CGGCTCCCGG CGGAGGTGGG CCGGATTACG GCGGAGGTGA TCGCGGCGGG CGTGCCTGGG GACCGGTTGG GTATTCACAC CCATAACGAC ACCGGCAATG CGGTGGCCAA TGCACTTGCC GCGATCGACG CGGGCGCGCG GCAGGTGCAG GGCACGCTGA ACGGGCTGGG CGAGCGGTGC GGCAATGCCA ATCTGGTCAC GCTGATCCCG ACGCTGTTGT TGAAGGAGCC TTATGCCAGC CGGTTCGAGA CCGGGGTGAG TGCCGCGGCG CTGCGGGACC TGGTGCGGGT GTCGCGGACG CTTGACGATA TTCTCAACCG GGTGCCGACC AAGAGCGCGC CCTATGTGGG CGCGTCGGCG TTTGCGCACA AGGCGGGCCT GCATGCCTCG GCGATCCTGA AGGACCCCAG CACTTACGAG CATATCCCGC CGGAGGCGGT GGGCAATGCG CGGGTCATTC CGATGTCGAA CCAGGCCGGG CAGTCGAACC TGCGCAAGCG TCTGGCCGAT GCGGGGATCG CCGTACAGAA GGGGGATATG CGGCTCGGGG CGCTTCTGGA CGAGGTAAAG CGGCGGGAGG ATATGGGATA TTCCTTCGAC AGTGCGCAGG CGTCGTTTGA ACTGCTCGCG CGGCGGCATC TGGAGGGGCT GCCGGAGTTC TTCGAGGTCA AGCGCTACAG GGTGACGGTG GAGCGGCGCA AGAACAAGTA CGACCGGATG GTCAGCCTCT CGGAGGCGGT GGTGGTCCTG AAGATCGGGG ATGAGAAGAT GCTGTCGGTG TCGGAGTCCA TGGACGAGAC CGGCTGCGAC CGGGGGCCGG TGAACGCGCT GGCCAAGGCG CTCGGCAAGG ATCTGGGGCC CTATACGCCC TATATCGCAG ACCTGCGGCT GGTGGATTTC AAGGTGCGGA TCACCAATGG CGGCACCGAG GCGGTGACCC GTGTTCTGAT CGACAGCGAG GACGGGCAGG GGCGGCGCTG GTCCACCGTT GGTGTGTCGG CCAACATCGT GGATGCAAGC TTCGAGGCGT TGGTCGAGGC GATCCAGTGG AAGCTGATCC GCGACGGTGC GCCCCGCATC GCGCTGGCCG CCGAATGA
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Protein sequence | MNERLYLYDT TLRDGQQTQG VQFSTPEKQQ IAAALDALGI DFIEGGWPGA NPTDSEFFAS APTFDHARFA AFGMTKRAGF SAENDDVLAA VLNAGTQAVC LVGKSHEYHV TRALGISLAE NTENIARSVA HLVAQGREAI FDAEHFFDGY LANPGYAVET LQAALEAGAR WVVLCDTNGG RLPAEVGRIT AEVIAAGVPG DRLGIHTHND TGNAVANALA AIDAGARQVQ GTLNGLGERC GNANLVTLIP TLLLKEPYAS RFETGVSAAA LRDLVRVSRT LDDILNRVPT KSAPYVGASA FAHKAGLHAS AILKDPSTYE HIPPEAVGNA RVIPMSNQAG QSNLRKRLAD AGIAVQKGDM RLGALLDEVK RREDMGYSFD SAQASFELLA RRHLEGLPEF FEVKRYRVTV ERRKNKYDRM VSLSEAVVVL KIGDEKMLSV SESMDETGCD RGPVNALAKA LGKDLGPYTP YIADLRLVDF KVRITNGGTE AVTRVLIDSE DGQGRRWSTV GVSANIVDAS FEALVEAIQW KLIRDGAPRI ALAAE
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