| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1652 |
|---|
| Symbol | |
|---|
| ID | 5713217 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1717206 |
|---|
| End bp | 1718564 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641267568 |
|---|
| Product | putative solute-binding protein 1 family |
|---|
| Protein accession | YP_001532995 |
|---|
| Protein GI | 159044201 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.182094 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00000465499 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGACACA CACTTCACGC GAGTGCGGCT GCGCTCGCCC TGTCTGCTGG CATGGCCGGA
GCCGGAGGCC ATCTTGCGTT CACGCCGGGA GAGGGTGAGT TCAACTGGGA CAGCTATCAA
GCGTTCGCCG AGGCCACCGA CCTGTCCGGG CAGGACCTGT CGATCTTCGG GCCCTGGCTC
GCCGGGGAGG CCGATGCATT CTCAAACCTT GTGGCCTTCT TCAACGAAGC GACCGGGGCA
AATGCGACCT ATGTGGGCTC CGACAGTCTC GAGCAGCAGA TCGTGATTGA CGCCGAGGCG
GGTTCCGCTC CGGACCTGAC CGTGTTTCCA CAGCCGGGTC TGGCGACCAC CATGGCAGCG
CGCGGCTTCC TGACCCCGCT TCCCGATGGC ACCGACGACT GGCTGCGTGA GAATTATGCC
GCCGGGCAGT CCTGGATCGA TCTTGGCACC TATGCGGACG GGTCGGGCAA CGACCAGCTC
TACGGCTTTT TCTTCAATGT AAACGTGAAG TCGCTGGTCT GGTACATCCC CGAGAACTTC
GAGGATTTCG ATTACGAAGT TCCCGAAACC ATGGAAGAGT TCAAAGCGTT GATGGACCAG
ATGGTCGAGG ACGGTCAGAC GCCGCTTTGC GTCGGACTGG GCTCTGGGGG GGCTACGGGC
TGGCCGGCGA CCGATTGGGT TGAGGATCTG ATGCTGCGCA CCCAGCCGCC CGAGGTCTAT
GATGCTTGGG TGTCCAACGA GATGCCCTTC GACGACCCGC GCGTGGTTGC GGCGATCGAG
GAGTACGGCA GCTTCACCCG CAATGACGAT TACGTGGTGG GCAATGCCAA CGACACCGCG
TCTGTCGATT TCCGCGAAAG CCCGCTGGGC CTGTTTGCTT CGCCCCCCGC CTGCATGATG
CACCGCCAGG CGAGCTTCAT TCCCGCCTAT TTCCCCGAGG GCACCGAGCT GGGCGAGGAT
GCGGATTTCT TCTACTTCCC GGCCTTTGAG GAAAAGGACT TGGGGCGTCC GGTTCTGGGT
GCCGGTACGC TGTTCGCGAT CACCAACGAG AACCCGGCTG CAAGCGCCTT CATCGAGTTT
CTCAAGACGC CCTTCGCCCA TGAGATCATG ATGGCGCAGG ATGGGTTCTT GACCCCGTTC
AAGGGCGCGA ACCCCGCGGC TTATGCCAGC GATACGCTGC GCGGGCAGGG CGAGATCCTG
ACCAATGCGA CCACCTTCCG CTTCGACGGC TCGGACCTGA TGCCTGGCGG CGTCGGGGCA
GGGACCTTCT GGACTGGTAT GGTCGATTAC TCCTCCGGTG CGAAATCCGC CGCCGACGTG
GCGAGCGAGA TCCAGGCCTC CTGGGAATCT CTCAAGTAA
|
|---|
| Protein sequence | MRHTLHASAA ALALSAGMAG AGGHLAFTPG EGEFNWDSYQ AFAEATDLSG QDLSIFGPWL
AGEADAFSNL VAFFNEATGA NATYVGSDSL EQQIVIDAEA GSAPDLTVFP QPGLATTMAA
RGFLTPLPDG TDDWLRENYA AGQSWIDLGT YADGSGNDQL YGFFFNVNVK SLVWYIPENF
EDFDYEVPET MEEFKALMDQ MVEDGQTPLC VGLGSGGATG WPATDWVEDL MLRTQPPEVY
DAWVSNEMPF DDPRVVAAIE EYGSFTRNDD YVVGNANDTA SVDFRESPLG LFASPPACMM
HRQASFIPAY FPEGTELGED ADFFYFPAFE EKDLGRPVLG AGTLFAITNE NPAASAFIEF
LKTPFAHEIM MAQDGFLTPF KGANPAAYAS DTLRGQGEIL TNATTFRFDG SDLMPGGVGA
GTFWTGMVDY SSGAKSAADV ASEIQASWES LK
|
|---|
| |