Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1642 |
Symbol | alaS |
ID | 5713207 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 1701885 |
End bp | 1704548 |
Gene Length | 2664 bp |
Protein Length | 887 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641267558 |
Product | alanyl-tRNA synthetase |
Protein accession | YP_001532985 |
Protein GI | 159044191 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0013] Alanyl-tRNA synthetase |
TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.338529 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.000000000232232 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCGAGCC TTAATGAAAT CCGCAGTACG TTCTTGAACT TCTTCGGTGG CCACGGCCAC GAGATCGTCG ACAGCTCACC GCTTGTGCCG CGCAACGACC CGACGCTGAT GTTCACTAAT GCGGGGATGG TGCAGTTCAA GAACGTCTTC ACTGGCCTGG AGCACCGCGA TTACAACCGC GCCACCACCA GCCAAAAATG CGTGCGCGCA GGTGGAAAGC ACAATGATCT CGACAATGTG GGCTATACCG CGCGTCACCA TACCTTCTTC GAAATGCTGG GGAATTTCAG CTTCGGGGAC TATTTCAAGG AAGATGCGAT TCCCTTCGCC TGGGACCTGA TCACCAAGGA GTTCGGCATC GACAAGTCCC GACTTCTCGT CACGGTCTAC CACACCGATG ACGAGGCGGC CGAGATATGG AAGAAGCACG CGGGCCTGAG CGATGACCGC ATCATCCGGA TTCCGACCAA TGACAATTTC TGGATGATGG GCCCGACGGG GCCTTGCGGA CCTTGTACCG AGATTTTCTA TGACCATGGG GACCACATCT GGGGCGGGCC CCCGGGCAGC CCGGAAGAGG ACGGCGACCG TTTCATCGAG ATCTGGAACC TCGTCTTCAT GCAGTTCGAG CAATTCGAGG ATGGCACGCG GGAGCCTTTA CCAAAGCCGT CCATCGACAC GGGAATGGGA CTTGAACGGA TCGGCGCATT GCTGCAGGGC AGCCATGACA ATTATGACAC GGACCTGTTC AAGACTTTGA TCGAGGCTTC TGCGCATGCC ACCAGCGTCG ATCCTTACGG CGACAAGAAC GTTCATCACC GCGTCATCGC CGATCATCTG CGCTCGACCT CGTTCCTGAT CGCAGACGGG GTGATGCCAT CGAACGAAGG GCGCGGTTAC GTACTGCGCC GGATCATGCG GCGTGCCATG CGTCATGCGC ATTTGCTGGG CGCTCAGGAC CCGGTCATGT ATCGACTCGT TCCCGCGCTT GTCGGACAGA TGGGGCAGGC TTTCCCCGAG CTGGGGCGCG CGCAGGCGTT GATCGAAGAG ACACTGATGC TGGAGGAGAC CCGTTTCCGG CAGACGCTGG ACCGGGGCCT GAAGCTGCTG GACGAGGCCG TGGCCGATGT TCCCGAGGGG GGTGCCTTGC CGGGCGAGAC AGCGTTCAAG CTTTATGACA CCTATGGTTT TCCGCTCGAT CTGACTCAGG ATGCGCTGCG CGAGAAGGGA CGTGCCGTGG AAACCGAGGG TTTTGATGCC GCCATGGCGG ATCAGAAGGC CAAAGCTCGC GCGGCTTGGG CAGGCTCCGG TGAAACTGCC GATGAGAGCA TTTGGTTCGA TCTGGCAGAG ACTCATGGCG CAACCGAGTT CCTGGGCTAT GACACCGAGG TCGCCGAAGG ACAGGTTCTG GCACTGGTCA AGGATGGTGC GCAGGTCGCG CAACTGGCCG AGGGCGAGAC CGGATGGATG GTGCTTAACC AGACACCGTT CTATGCGGAA TCCGGCGGGC AGGTCGGAGA TAGCGGGGGC TATCTGAAGT CCAATGGCTC CGGGGCGATC CACGACACCC AGAAAAGGAA CGGCCTCTTC GCGCACAAGG TAACCCCGAA AGCGCAACCC TTGAAAGCCG GCGACGTGCT GGAGATGCGA GTCGATCCCG CGCGGCGCAC GGCGATCCGG GCCAACCACT CCGCGACGCA CCTTTTGCAC GAGGCGCTGC GCCAGGCCTT GGGCGCTCAT GTGGCGCAGC GTGGATCTCT GAATGCCGCG GACCGCTTGC GGTTCGATTT CAGCCATTCC AAGGCCCTGA CGCTCGAAGA GCTGCAAAAA GTCGAGGCCG AGGTGAACGC CTACATTCGC CAGAACAGTC CCGTTGAGAC CCGCATCATG ACCCCTGACG CGGCACGTGA TCTCGGTGCG CAGGCCCTTT TTGGCGAGAA GTATGGCGAC GAGGTGCGTG TTGTGTCGAT GGGCCGCCAA TCCGGCTCCG GCAAAGGTGT TTCGGGCGAG ACCTATTCGC TCGAGCTTTG CGGCGGCACC CATGTGAAGC AGACCGGCGA TATTGGTGTG TTCGTCACGG TGGGAGAGAC GGCGTCGTCT TCTGGGGTGC GCCGGATCGA GGCGCTGACC GGCGAAGACG CTTTCGCCTA TCTCAGTGCT CAGGATTACA GGCTTGCGGA AGTTGCAGCC AGCCTCAAGG CGCAGGCTGC GGATGTTCCG GAGCGCGTGC GATCCCTGCT GGACGAACGC AAGGCCTTGC AGAACGAAGT GGCGCAGTTG CGCCGGGAAC TGGCCATGGC TGGAGGCGGG CAAGGCACCG CTGCACCCGA GGCCGAAGCT GTGGCGGGGG TGCCCTTTCT GGCGCAGTCC CTGTCCGGGG TATCCGGGCG CGATCTTCCG TCGTTGATCG ACGAGCACAA AGCGCGGCTC GGTTCCGGGG CGATCCTGCT GATTGCCGAT ACCGGGGGCA AGGCCGCTGT TGCCGCCGGT GTGACAGCGG ATCTGACCGA CCGTCTGTCG GCCGTCGATC TCGTCAAAGC CGCGGTGGCG GAGCTTGGGG GCAAGGGCGG CGGTGGTCGT CCTGACATGG CTCAGGGCGG GGGCAAGGAC GCGAGCAAAG CGGATGCGGC GATCGCCGCC GCCAAGGCAG TGATTGGAGG ATAA
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Protein sequence | MPSLNEIRST FLNFFGGHGH EIVDSSPLVP RNDPTLMFTN AGMVQFKNVF TGLEHRDYNR ATTSQKCVRA GGKHNDLDNV GYTARHHTFF EMLGNFSFGD YFKEDAIPFA WDLITKEFGI DKSRLLVTVY HTDDEAAEIW KKHAGLSDDR IIRIPTNDNF WMMGPTGPCG PCTEIFYDHG DHIWGGPPGS PEEDGDRFIE IWNLVFMQFE QFEDGTREPL PKPSIDTGMG LERIGALLQG SHDNYDTDLF KTLIEASAHA TSVDPYGDKN VHHRVIADHL RSTSFLIADG VMPSNEGRGY VLRRIMRRAM RHAHLLGAQD PVMYRLVPAL VGQMGQAFPE LGRAQALIEE TLMLEETRFR QTLDRGLKLL DEAVADVPEG GALPGETAFK LYDTYGFPLD LTQDALREKG RAVETEGFDA AMADQKAKAR AAWAGSGETA DESIWFDLAE THGATEFLGY DTEVAEGQVL ALVKDGAQVA QLAEGETGWM VLNQTPFYAE SGGQVGDSGG YLKSNGSGAI HDTQKRNGLF AHKVTPKAQP LKAGDVLEMR VDPARRTAIR ANHSATHLLH EALRQALGAH VAQRGSLNAA DRLRFDFSHS KALTLEELQK VEAEVNAYIR QNSPVETRIM TPDAARDLGA QALFGEKYGD EVRVVSMGRQ SGSGKGVSGE TYSLELCGGT HVKQTGDIGV FVTVGETASS SGVRRIEALT GEDAFAYLSA QDYRLAEVAA SLKAQAADVP ERVRSLLDER KALQNEVAQL RRELAMAGGG QGTAAPEAEA VAGVPFLAQS LSGVSGRDLP SLIDEHKARL GSGAILLIAD TGGKAAVAAG VTADLTDRLS AVDLVKAAVA ELGGKGGGGR PDMAQGGGKD ASKADAAIAA AKAVIGG
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