Gene Dshi_1636 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1636 
Symbol 
ID5712781 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1698812 
End bp1699540 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content63% 
IMG OID641267552 
Producthypothetical protein 
Protein accessionYP_001532979 
Protein GI159044185 
COG category[S] Function unknown 
COG ID[COG1814] Uncharacterized membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.790836 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.00000056751 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGGACCTGA AAGCCCACAT CAAATCCGCA CACGGGATCA GCGCTTTGAA TGCGCGCCTC 
CGCCAGATCG TCTATGGCGG CAATGACGGT ATTGTCACCA CCTTTGCCGT GGTCGCGGGC
TTCGCAGGGG CCGGTGCCGA GGGCACCGCG CAGATCGGGG CCGTGGCAGT GATCCTCTTC
GGCCTTGCCA ACCTGTTCGC GGATGCGGCC TCCATGGGCC TTGGCGAGTA TCTGTCGTCC
CGCGCGGAGC GCGACGTCTA CCGCAAGAAT CGTCGGGAGG AGATCCGACG CTTCCGCACG
GAAACCGTAT CAGAACGCAA GGAGGTGCTC GCGATTCTGG CTGAGAAGGG CCTGAGCGGT
TCAGACGCCC GCGCCTTCGC CGACCAGTTA GAACACCATC CCGAGTTGAT GGCCGATTTC
ATGATGCTCT ACGAATTCGG CCTGTCGGCT CCAGAGGATG GCGAAGAAGT CTGGAACGGC
CTGACCACCT TCATTTCCTT TCTGGCCTTC GGGGTCTTGC CGCTGCTGCC GTTCTTTTTC
GGTGTGGCGG AGGCGGATGC GCTGGCCGTT TCCGCAGGCT CCAGCCTCGG GGCGCTCTTG
CTGCTCGGAT TGCTGCGCGC TCAGGCCACG GGGGAGCGGC ACCTGCGCTG CGTGGTCGAA
ACCTTGCTTG TGGGTCTGGT ATGCGGGGCC GTAGCCTATG TCGTGGGATG GGTCGTGATG
AGCGGCTGA
 
Protein sequence
MDLKAHIKSA HGISALNARL RQIVYGGNDG IVTTFAVVAG FAGAGAEGTA QIGAVAVILF 
GLANLFADAA SMGLGEYLSS RAERDVYRKN RREEIRRFRT ETVSERKEVL AILAEKGLSG
SDARAFADQL EHHPELMADF MMLYEFGLSA PEDGEEVWNG LTTFISFLAF GVLPLLPFFF
GVAEADALAV SAGSSLGALL LLGLLRAQAT GERHLRCVVE TLLVGLVCGA VAYVVGWVVM
SG