Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1611 |
Symbol | xerD |
ID | 5712755 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 1674956 |
End bp | 1675882 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641267526 |
Product | tyrosine recombinase |
Protein accession | YP_001532954 |
Protein GI | 159044160 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.4794 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCTGC ATTGGATCGA CGCATTTCTC GATGCCCAGG CGGCAGAGCT GAACGCGGCT GAGAATACGC GCCTTGCCTA TGCCCGCGAC CTGATGGATT TCCAGGGCCA TATACGCCGT CGGGGGCTGG ACTTCGACCA GGTCCAGCGC GCCGATATCG AAACCTATCT CATCGCCTGC TCTGATGCCG GTCTCAGCCA GGCCACTCGC GCCCGTCGGC TGTCGGCGAT CCGGCAACTC TATCGTTTCG CATATGAGGA AGGCTGGCGC ACCGACAATC CCAGCCTGCA GATCAAGGGA CCGGGGCGCG CGAAACGCCT TCCCAAGACC TTGTCGGAGG CGGATGTGGA TCGTTTGCTC GCGGCGGCGC GGAACACGGG GCGCAGTCCG TCCGACCGGC AGCGCAATGC CTGCATGCTG GAATTGCTCT ATGCGACCGG CTTGAGGGTG ACGGAGTTGT GCGGACTACC GGTCGCGGCT GTGCGCGGCG ATCCGCACCT GATCCTCGTG CGCGGCAAGG GCGGCAAGGA GCGGATGGTG CCCCTGTCGA CACCAGCGCG CACCGAATTG CAGGCTTGGC TGAAAGTTCG CGACGCTGCC GAGCAAACCG CGATCAGCAA GGGGGCGGCG CCCTCGAAAT ACCTCTTTCC GTCACGCGGC AAGCTGGGGC ATCTGACCCG GCACCGGTTC TACGCGCTGA TCAAGGATAT CGCCGTGGCA GCGGGCGTGG ACCCGTCCGG GGTCACGCCG CACACCTTGC GCCATGCGTT CGCGACACAT CTCTTGGCAC GGGGCGCGGA CCTGATGTCG ATTCAGGCGC TTCTGGGTCA TGCGGATGTG GCGACCACCG AGATCTACAC ACATGTGCTG GACGCGCGGC TCAGGGAACT GGTGCTGACC CATCACCCCC TGGCGACAAA GGGCTAG
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Protein sequence | MSLHWIDAFL DAQAAELNAA ENTRLAYARD LMDFQGHIRR RGLDFDQVQR ADIETYLIAC SDAGLSQATR ARRLSAIRQL YRFAYEEGWR TDNPSLQIKG PGRAKRLPKT LSEADVDRLL AAARNTGRSP SDRQRNACML ELLYATGLRV TELCGLPVAA VRGDPHLILV RGKGGKERMV PLSTPARTEL QAWLKVRDAA EQTAISKGAA PSKYLFPSRG KLGHLTRHRF YALIKDIAVA AGVDPSGVTP HTLRHAFATH LLARGADLMS IQALLGHADV ATTEIYTHVL DARLRELVLT HHPLATKG
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