Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1567 |
Symbol | hfq |
ID | 5712711 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 1632675 |
End bp | 1632953 |
Gene Length | 279 bp |
Protein Length | 92 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 641267482 |
Product | RNA-binding protein Hfq |
Protein accession | YP_001532910 |
Protein GI | 159044116 |
COG category | [R] General function prediction only |
COG ID | [COG1923] Uncharacterized host factor I protein |
TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.104021 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.0520931 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCAGGA ATTTGCGCGC ACCCAAAAGA AAAAAGGCAC ACAGAATGGC CGGCGACAAA CAGAATTTGC AGGACGCTTT TCTCAACCAT GTTCGTAAAA CAAAGGTGCC CGTCACCGTT TTTCTGATCA ACGGGGTGAA GTTGCAGGGG GTGATCACCT GGTTCGACAA CTTCTGCGTA CTCCTGCGCC GCGATGGGCA AAGCCAACTG GTCTACAAGC ACGCCATCTC CACCGTGATG CCGACCCAGC CCATCAGCCT GTACGAGGGC GACGACTGA
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Protein sequence | MRRNLRAPKR KKAHRMAGDK QNLQDAFLNH VRKTKVPVTV FLINGVKLQG VITWFDNFCV LLRRDGQSQL VYKHAISTVM PTQPISLYEG DD
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