| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1562 |
|---|
| Symbol | |
|---|
| ID | 5712706 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1626290 |
|---|
| End bp | 1626820 |
|---|
| Gene Length | 531 bp |
|---|
| Protein Length | 176 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641267477 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001532905 |
|---|
| Protein GI | 159044111 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.000177224 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.0964929 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGACCTCT ATCTCACGAT TGCCGAACTG ATCGACACCA GGTCGTTTTC CTCCGTGTGG
TTCTGGATCA CCCTCGCCGT GTTCTGGTCG ATCATCAGCC ACTACGTCGT GGGCGTGCCG
TTCGACCTGG TGCAACGCGC CCAGCGGCGC GACGATCCAC GGGCCTGGGA CGACCTGGAG
CGGCTCAGCC GGATCAACGC GCGGCGGTTG AGCTTCATCG GGTCCAGTGC GGGGCTGATC
GTCACCGGGG TGGCGGGCTT CGTGCTCTCG GCGCTGTTCC TGTTGGGCTT TGCCTACCGG
GTGGAGCTGT GCCAGGCGCT GTTCCTGCTG GCCTTTCCGT TCTGCCTCGT GAGTCTTTTG
ACGCAACGCA CGGCGCGGGA GATCCTGGCC AAGGATCCGA CCGGCGAAGA CCTTGTCCAG
GGGCTGAAAC GGCACCGGCT CTATACTCAG CTGATCGGGA TCGTGTCGAT TTTCGTGACC
GCGTTCTGGG GGATCTGGCA AACCATGAGC ACAGGCGTGC TCGGCAACTG A
|
|---|
| Protein sequence | MDLYLTIAEL IDTRSFSSVW FWITLAVFWS IISHYVVGVP FDLVQRAQRR DDPRAWDDLE
RLSRINARRL SFIGSSAGLI VTGVAGFVLS ALFLLGFAYR VELCQALFLL AFPFCLVSLL
TQRTAREILA KDPTGEDLVQ GLKRHRLYTQ LIGIVSIFVT AFWGIWQTMS TGVLGN
|
|---|
| |