Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1387 |
Symbol | clpX |
ID | 5712563 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 1440553 |
End bp | 1441812 |
Gene Length | 1260 bp |
Protein Length | 419 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641267299 |
Product | ATP-dependent protease ATP-binding subunit ClpX |
Protein accession | YP_001532730 |
Protein GI | 159043936 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.0849267 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGAACA ACTCCGGCGA CAGCAAGAAT ACGCTCTACT GCTCCTTCTG CGGCAAGAGT CAGCATGAAG TGCGCAAGCT GATTGCAGGG CCCACCGTGT TCATCTGCGA TGAATGCGTC GAGCTGTGCA TGGACATCAT CCGCGAAGAG ACGAAATCAT CCGGTCTGAA ATCGTCCGAA GGCGTTCCGA CGCCGCAGGA GATTTGCGAT GTCCTCGATG ATTACGTGAT CGGCCAGAGC CACGCCAAGC GCGTGCTCTC GGTGGCGGTC CATAACCACT ACAAACGTCT GAACCATGCG GGCAAGACGG ATATCGAACT GGCCAAGTCC AACATCCTGC TGATCGGGCC CACGGGCTGC GGCAAGACGT TGCTGGCTCA GACGCTGGCG CGGATCCTCG ATGTGCCTTT CACCATGGCG GATGCGACGA CCCTGACCGA AGCCGGTTAT GTGGGCGAGG ATGTGGAGAA TATCATCCTC AAGCTGCTAC AGGCGTCGGA ATACAATGTG GAGCGCGCGC AGCGCGGCAT CGTCTATATC GACGAGGTCG ACAAGATCAC CCGCAAGTCC GACAATCCCT CGATCACGCG GGATGTCTCG GGCGAAGGGG TGCAGCAGGC GCTTCTGAAG ATCATGGAAG GCACGGTCGC CTCGGTGCCG CCCCAGGGCG GGCGCAAACA TCCGCAGCAG GAGTTCCTGC AGGTGGACAC GACCAACATC CTGTTCATCT GCGGCGGTGC GTTCGCGGGT CTCGAGAAGA TCATCGCGCA GCGCGGCAAG GGCTCTGCCA TCGGCTTCGG TGCCGATGTG AAGGAGAACG ACACCCGCGG CGTGGGGGAG ATGTTCGGCG AGCTGGAGCC GGAGGATCTG CTGAAATTCG GGCTGATCCC GGAATTCGTA GGCCGCCTGC CGGTGATCGC GACCCTCACG GATCTCGACG AGGACGCGCT GGTCACGATC CTGACCCAGC CGAAGAACGC GCTGGTCAAG CAGTACCAGC GGCTCTTCGA GTTGGAGGAT GCGCAGCTGA CCTTCACCGA GGATGCGCTG AACGCCATCG CCGGGCGCGC GATCGAACGC AAGACCGGGG CACGCGGCCT GCGCTCGATC CTCGAGGACA TCCTGCTGAA CACGATGTTC GACCTGCCGG GTCTGGACAA CGTGGACGAG GTGGTGGTCA ACGAAGAGGT CGTCTCGGGC GATGCGCAGC CGCTGCTGAT CTATGCCGAG CGCAAGGAAG AGCCCGCCAC CGTGGGCTGA
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Protein sequence | MANNSGDSKN TLYCSFCGKS QHEVRKLIAG PTVFICDECV ELCMDIIREE TKSSGLKSSE GVPTPQEICD VLDDYVIGQS HAKRVLSVAV HNHYKRLNHA GKTDIELAKS NILLIGPTGC GKTLLAQTLA RILDVPFTMA DATTLTEAGY VGEDVENIIL KLLQASEYNV ERAQRGIVYI DEVDKITRKS DNPSITRDVS GEGVQQALLK IMEGTVASVP PQGGRKHPQQ EFLQVDTTNI LFICGGAFAG LEKIIAQRGK GSAIGFGADV KENDTRGVGE MFGELEPEDL LKFGLIPEFV GRLPVIATLT DLDEDALVTI LTQPKNALVK QYQRLFELED AQLTFTEDAL NAIAGRAIER KTGARGLRSI LEDILLNTMF DLPGLDNVDE VVVNEEVVSG DAQPLLIYAE RKEEPATVG
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