Gene Dshi_1301 details

Gene Information

• Locus tag: Dshi_1301
• Symbol: mccA
• ID: 5711859
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dinoroseobacter shibae DFL 12
• Kingdom: Bacteria
• Replicon accession: NC_009952
• Strand: +
• Start bp: 1355325
• End bp: 1357310
• Gene Length: 1986 bp
• Protein Length: 661 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641267213
• Product: carbamoyl-phosphate synthase L chain ATP-binding
• Protein accession: YP_001532644
• Protein GI: 159043850
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit
• TIGRFAM ID: [TIGR00514] acetyl-CoA carboxylase, biotin carboxylase subunit

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.206291
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 29
• Fosmid unclonability p-value: 0.197906
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGTTTGAGC GTATCCTGAT CGCGAACCGG GGCGAGATCG CCTGCCGCGT CATCGACACC 
TGTCGGCGGC TCGGGGTGCA GACCGTGGCG GTGCATTCCG ACGTGGATGC CGGGGCGCGG 
CATGTGGCCA TGGCGGATAT GGCGGTGAAC CTCGGCGGGG CCGCGCCGCG TGACAGCTAC 
CTGCGGGGGG AGGCGATCAT CGCCGCGGCC AGGGCGACCG GGGCGGAGGC GATCCATCCC 
GGTTACGGCT TTCTGTCGGA GAACCCGGAT TTCGTGGAGG CCGTGGCGGC GGCCGGGCTG 
GTCTTCATCG GGCCTTCGGC GGCGGCGATC CGGGCGATGG GCCTGAAGGA TGCCGCCAAG 
GCGCTGATGG CGGAGGCGGG CGTGCCGGTT GTGCCCGGCT ACCAGGGGGC GGATCAGGAC 
CCCGCGCGCC TGGCGGCGGA GGCCGAGGCG ATCGGTTATC CGGTGCTGAT CAAGGCCGTG 
GCGGGCGGCG GCGGCAAGGG CATGCGCCGG GTCGAGGGGC CGGAGGGGTT CGCCGGTGCG 
CTGGAGGCGG CCCGGGCCGA GGCGCGCGGT GCGTTTGGCA ATGACCATGT GCTGTTGGAG 
AAATACGTGG CGACGCCGCG CCATATCGAG CTGCAGGTGT TCGGGGATGG TGCGCGGGCG 
GTGCATCTCT TCGAGCGGGA CTGTTCGCTC CAGCGGCGTC ACCAGAAGGT GATCGAGGAA 
GCGCCAGCCC CCGGCATGAC GCCGGAGATG CGCGCGGCCA TGGGGGCGGC GGCGGTGCGG 
GCGGCGGAGG CCATCGGCTA TGCCGGGGCG GGCACGGTGG AGTTCATCGT GGACGCCAGC 
GACGGGCTGC GCCCGGATCG GTTCTGGTTC ATGGAGATGA ACACGCGCCT GCAGGTGGAG 
CATCCGGTGA CCGAGGCGGT GACCGGCGTC GACCTGGTGG CGTGGCAATT GCGCGTGGCG 
TCGGGGGAGC CTTTGCCCGC GCGGCAAGAG GATCTGTCCT TGCGGGGGCA CGCCTTCGAG 
GCGCGGCTTT ATGCGGAGGA CGTGCCCAAG GGCTTTCTGC CTGCGACCGG GCGGCTCACC 
CATCTGGCCT TTCCGGCGGA TGCGCGGATC GAAACCGGGG TGCGCGCGGG CGACGAGATC 
AGCCCGTGGT ACGATCCGAT GATCGCCAAG CTGGTGGTCC ATGGCCCGAC GCGGCAAAGC 
GCCTTGCGCA AGCTCGACCG GGTGCTGGCG GGGTGCGAGG TGGCCGGGTC GGTGACGAAC 
CTCGCCTTTC TGCGGGCGTT GGCGCGGCAT GGCGGGTTTT TTGCGGGCGA GGTGGATACC 
GGCCTGATCG ACCGGGAGGT CGAGACCCTG TCGCCCGCGC CGGTGCCGTG CAGCCGGGCG 
CGCGCGCTGG CGGCGCTCGG GGCGGCGGGG CTCCATGAAG GGGGGCCGGA CGGGGCGGGG 
TTCACGCTAT GGGCGCCGCT GGTGCAGGCG CAGGGGCTGC GGTTCGGCGA GGCGGAGATC 
GAGGCCCGGA TCGAGACACG CGGGGCCGGC AGTTTCCGGG TGGGCATCGG GGAGGCGACC 
CACGAGATCA CCCGGCGCGG CGGGGCCTGG TGGGTGGACG GCGCACCGAC ACCGGCGCGG 
ATCGTCGTCC ATGCCGCGGG CGTCAGCGTG TTCTGGGGCA ACAATTACCA CTTCACCGCG 
CCCGACCCGC TGCACCGGGC CGGGGCGGCG GGACCGGGGG CGGGCCATGT GGAGGCGCCG 
ATGCCGGGGC TGGTGAAGGC GGTGTTCGTC GCCCCCGGCG ATACCGTGGC GCAGGGCGCG 
CGGCTCGCGA TCCTGGAGGC GATGAAGATG GAGCATACGC TGACGGCGGG CCGGGACGGG 
GTGGTGTCGG AGGTTCTGGT GGCCGAGGGC GCACAGGTCA GCGCCGGAGC GCCGCTGATC 
CTGCTGGCCC CCGACGAAAC CCCAAACGAG CGCACGGATG AGAGCCCGGA GGAGGCCGCC 
GAATGA 

 

Protein sequence

MFERILIANR GEIACRVIDT CRRLGVQTVA VHSDVDAGAR HVAMADMAVN LGGAAPRDSY 
LRGEAIIAAA RATGAEAIHP GYGFLSENPD FVEAVAAAGL VFIGPSAAAI RAMGLKDAAK 
ALMAEAGVPV VPGYQGADQD PARLAAEAEA IGYPVLIKAV AGGGGKGMRR VEGPEGFAGA 
LEAARAEARG AFGNDHVLLE KYVATPRHIE LQVFGDGARA VHLFERDCSL QRRHQKVIEE 
APAPGMTPEM RAAMGAAAVR AAEAIGYAGA GTVEFIVDAS DGLRPDRFWF MEMNTRLQVE 
HPVTEAVTGV DLVAWQLRVA SGEPLPARQE DLSLRGHAFE ARLYAEDVPK GFLPATGRLT 
HLAFPADARI ETGVRAGDEI SPWYDPMIAK LVVHGPTRQS ALRKLDRVLA GCEVAGSVTN 
LAFLRALARH GGFFAGEVDT GLIDREVETL SPAPVPCSRA RALAALGAAG LHEGGPDGAG 
FTLWAPLVQA QGLRFGEAEI EARIETRGAG SFRVGIGEAT HEITRRGGAW WVDGAPTPAR 
IVVHAAGVSV FWGNNYHFTA PDPLHRAGAA GPGAGHVEAP MPGLVKAVFV APGDTVAQGA 
RLAILEAMKM EHTLTAGRDG VVSEVLVAEG AQVSAGAPLI LLAPDETPNE RTDESPEEAA 
E