| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1248 |
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| Symbol | |
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| ID | 5711806 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1295236 |
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| End bp | 1296480 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641267160 |
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| Product | extracellular solute-binding protein family 1 |
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| Protein accession | YP_001532591 |
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| Protein GI | 159043797 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.494424 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.639356 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCCAT CCACGAAATC GCTTCTGGCC GCGCTTGCCA CGTCTGTCGC CTTCACGGTG
CCCGCGGCGG CCGAGCTGAC CGGCGAGCTG AAGATTTTCT CGGATATGTC GAACCCGGCT
CCCCGCGCCA CCATGGAAGG TCTCGTCGCC GGGTTTCAGG AGCAGCACCC CGATCTCGAC
ATCGAGCTGA CGATCATCGA CCGCGAGGCC TACAAGACGC AGATCCGCAA CTTCCTGACG
GCCAACACGC CGGATGTGGC CAACTGGTAC GCGGGCAACC GGATGCTGCC CTTCGTCGAG
GCCGGGCTTT TCGAGGATAT CTCGGACCTC TGGGATGACG AGAAATCCGC AAATCTGGCG
TCGACCAAGC CGTCCATGAC CATCGACGGC AAGCAATGGG GCGTGCCCTA TACCTACTAC
CAATGGGGCG TGTATTACCG CGAGGACATC TATAACGACC TCGGCCTGAC CGAGCCGACC
ACCTGGGCCG AGGAAAAGGC GAACTGCCAG ACTCTGCTGG AAAACGGGAT CAAGTGTTAC
ACCATCGGCA CCAAGTTCTT GTGGACCGCG GGCGGCTGGT TCGACTACCT CAACCTGCGC
ACGAATGGCT ACGAGTTCCA CATGGCGCTC ACCAACGGCG AGGTCGCCTG GACCGACGAC
CGGGTGCGCC AGACCATGGC GAACTGGCGC GAGCTGATCG ATATGGGCGC CTTCATCGAC
AACCATCAGA CCTACAGCTG GCAAGAAGCC CTGCCTTTCA TGGTCCGGGG CGAAGCCGCC
GCCTACCTGA TGGGCAATTT CGCGGTCTCG CATCTGCGCG AGGCCGGGCT CGGCGACGAC
CAGCTGGGCT TTTATCAATT CGTCGAAATC ACCCCAGGCA TCCCCAAGGC CGAGGATGCG
CCGACCGACA CGTTCCACAT CCCCGCCCAG GCCGCGAACA AGGAAGCCGC CCGCGCCTTC
CTGCGGTATG TCACCTCTCC CGAGGTCCAG ACACAGATCA ACGCGGGCGA CCAGCTCGGC
CAGTTGCCCG TGCACAAGGC CGCCAGCGTG GATGACGACA AGTTCCTGAA AGAGGGCTTC
GACATGCTCT CGAACGCCTA CGCACTGGCA CAGTTCTTCG ACCGTGACGC GCCCGCCGAG
ATGGCCAAGG CGGGGATGGA GGGCTTCCAG GAATTCATGG TGAAACCCGA CAATCTCGAC
CGCATCCTGG AGCGGATGGA GCGGGTCCGC CAGCGCGTCT ACTGA
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| Protein sequence | MRPSTKSLLA ALATSVAFTV PAAAELTGEL KIFSDMSNPA PRATMEGLVA GFQEQHPDLD
IELTIIDREA YKTQIRNFLT ANTPDVANWY AGNRMLPFVE AGLFEDISDL WDDEKSANLA
STKPSMTIDG KQWGVPYTYY QWGVYYREDI YNDLGLTEPT TWAEEKANCQ TLLENGIKCY
TIGTKFLWTA GGWFDYLNLR TNGYEFHMAL TNGEVAWTDD RVRQTMANWR ELIDMGAFID
NHQTYSWQEA LPFMVRGEAA AYLMGNFAVS HLREAGLGDD QLGFYQFVEI TPGIPKAEDA
PTDTFHIPAQ AANKEAARAF LRYVTSPEVQ TQINAGDQLG QLPVHKAASV DDDKFLKEGF
DMLSNAYALA QFFDRDAPAE MAKAGMEGFQ EFMVKPDNLD RILERMERVR QRVY
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