| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1207 |
|---|
| Symbol | gatB |
|---|
| ID | 5711765 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1245310 |
|---|
| End bp | 1246827 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641267119 |
|---|
| Product | aspartyl/glutamyl-tRNA amidotransferase subunit B |
|---|
| Protein accession | YP_001532550 |
|---|
| Protein GI | 159043756 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0064] Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) |
|---|
| TIGRFAM ID | [TIGR00133] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.119991 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.857751 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGACC TCACATACGA GACCCCGAAA CCCAAGGTCA TCGCAGGCGC GCGGGAGGAT
TGGGAACTGG TGATCGGGCT TGAGGTGCAC GCCCAGGTCG CCACCAATGC CAAGCTGTTC
TCCGGCGCCT CGACCCTGTT CGGGGCGGAG CCGAATTCCA ACGTCGCGTT CGTGGATGCG
GGCATGCCGG GGATGCTGCC GGTGATCAAC GAGGAATGCG TCGCGCAAGC GGTCCGCACG
GGGCTGGGCC TGAAGGCGGC GATCAATCTG ACCTCGGCCT TCGACCGCAA GAACTATTTC
TATCCCGATC TGCCCCAGGG CTACCAGATC AGCCAGCTTT ACCACCCCAT CGTGGGCGAG
GGCGAGGTGC TGGTCGAGCT GGGCGATGGT ACGGCGCGCG TGGTGCGGAT CGAGCGCATT
CACCTGGAAC AGGACGCGGG CAAGTCGATC CACGACATGG ACCCGCATAT GTCCTTCGTG
GACCTGAACC GCACGGGCGT GGCCCTGATG GAGATCGTCT CCCGCCCCGA TATCCGCGGG
CCCGAAGAGG CGGCCGCCTA TGTCAGCAAG CTGCGCCAGA TCATGCGCTA TCTCGGCACC
TGCGACGGCA ACATGCAAAA CGGCAACCTG CGCGCGGATG TGAACGTGTC GGTCTGCCGC
CCCGGGGATT ACGAGAAATA CCAGGCGAGC CAGGATTTCT CACATCTCGG CACGCGCTGC
GAGATCAAGA ACATGAACTC CCTCCGGTTC ATCCAGCAAG CCATCGAATA CGAGGCGCGC
CGCCAGATCG CGATCATCGA GGACGGCGGC AGCGTGACCC AGGAAACCCG GCTCTACGAT
CCGGACAAGG GGGAGACGCG GTCCATGCGC TCCAAGGAAG AAGCGCATGA TTACCGCTAC
TTCCCCGACC CCGACCTGCT GCCGCTGGAG ATCGAGCAGG CCTGGGTCGA CGATATCGCC
GCCGCCCTGC CCGAGCTGCC CGACGCCAAG AAGGCGCGGT TCATCACCGA GTTCGGCCTG
TCGGATTACG ATGCCAGCGT CCTGACCGCC GACACCACTA ATGCCGCCTA TTTCGAGGCC
GTGGCGGGGG AGGCAGGCGA TGGCAAGCTC GCGGCGAACT GGGTGATCAA CGAGCTGTTC
GGGCGGCTGA AGAAGGAAGA CCACGACATC ACCGAAAGCC CGGTCTCGCC CGCGCAACTC
GCCGGGATCA TCAAGCTGAT CAAGGCCGAC GCGATTTCGG GCAAGATCGC CAAGGACCTG
TTCGAGATCG TCTATACCGA GGGCGGCGAT CCGGCCGAGA TCGTCGAGGC GCGCGGGATG
AAGCAGGTCA CCGATACCGG TGCGATCGAG GCCGCGGTGG ACGAGATCAT CGCCGCCAAT
CCCGCCCAGG TCGCCAAGGC GCAGGAAAAT CCCAAGCTCG CCGGTTGGTT CGTGGGCCAG
GTGATGAAGG CCACGGGCGG CAAGGCCAAC CCCAAGGCCG TGAACCAGAT CGTCGCCGCC
AAGCTGGCGC AGCAGTAA
|
|---|
| Protein sequence | MLDLTYETPK PKVIAGARED WELVIGLEVH AQVATNAKLF SGASTLFGAE PNSNVAFVDA
GMPGMLPVIN EECVAQAVRT GLGLKAAINL TSAFDRKNYF YPDLPQGYQI SQLYHPIVGE
GEVLVELGDG TARVVRIERI HLEQDAGKSI HDMDPHMSFV DLNRTGVALM EIVSRPDIRG
PEEAAAYVSK LRQIMRYLGT CDGNMQNGNL RADVNVSVCR PGDYEKYQAS QDFSHLGTRC
EIKNMNSLRF IQQAIEYEAR RQIAIIEDGG SVTQETRLYD PDKGETRSMR SKEEAHDYRY
FPDPDLLPLE IEQAWVDDIA AALPELPDAK KARFITEFGL SDYDASVLTA DTTNAAYFEA
VAGEAGDGKL AANWVINELF GRLKKEDHDI TESPVSPAQL AGIIKLIKAD AISGKIAKDL
FEIVYTEGGD PAEIVEARGM KQVTDTGAIE AAVDEIIAAN PAQVAKAQEN PKLAGWFVGQ
VMKATGGKAN PKAVNQIVAA KLAQQ
|
|---|
| |