Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1141 |
Symbol | ctaB |
ID | 5711109 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 1168989 |
End bp | 1169975 |
Gene Length | 987 bp |
Protein Length | 328 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641267052 |
Product | protoheme IX farnesyltransferase |
Protein accession | YP_001532484 |
Protein GI | 159043690 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGGCCG GCCCTTTTCG TGAAAGCCAG CGAGATCCCA TGAGCGACGC AAGCTTCGAC AGATCCATGC CCCTGAGCGG CGAAGGCAGC TTTGGCGACT ATTTCGCCCT GCTCAAGCCG CGCGTGATGT CCCTGGTGGT ATTCACCGCC CTTGTGGGGC TGCTCGTGGC GCCCGTCTCG TTGCACCCGA TGGTTGGGTT CTGCGCGATC CTGTTCATCG CCGTGGGGGC AGGGGCCTCC GGCGCGCTGA ACATGTGGTG GGACGCGGAT ATCGACGTGA TCATGAAGCG CACTGCGGGC CGCCCCGTTC CGGCGGGCAA GGTGCAGCCG GGCGAGGCGC TGGCCCTGGG TCTGGGCCTG TCGGGTCTGT CGGTGGTGAT GCTTGCGCTG GCCACCAACC TTCTGGCCGC GGGGCTTCTG GCCTTCACGA TCTTCTTCTA TGCGGTCGTC TATTCCATGT GGCTCAAACG CTCCACGCCC CAGAATATCG TGATCGGCGG GGCCGCGGGT GCCTTTCCTC CGATGATCGG CTGGGTGGCG GCGACGGGTT CGGTCAGCCT CGAGGCGGTG CTGATGTTCG CGCTGATCTT CATGTGGACG CCGCCGCATT TCTGGGCGCT CGCGCTCTTC ATGAAATCCG ACTACCACGA TGCGGGCGTG CCGATGCTGA CCGTGACCCA CGGGCGCAAA TCGACCCGCA CTCATATCCT GGTCTATACC GTGTTGCTGG TGCCTGTGGC GCTCGGCCTG GCGCTGACCC CGGTCGCGGG TCCACTTTAT CTCGCCACGG CCCTTGTTCT GAACGCGATC TTCCTCAAGG GGGCGTGGGA CATCTGGCGC CGTGACGAGG CGCAGGCGGA AGCGGATAAA TACGCGACCG AAAAACGCTT CTTCAAGTTT TCGCTGCTCT ATCTCGCCCT GCATTTCACC GCGCTGCTGG CCGAGGCAAT CCTGACCCGC AGCGGTCTTT GGACCTTCGG AGGGTAG
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Protein sequence | MRAGPFRESQ RDPMSDASFD RSMPLSGEGS FGDYFALLKP RVMSLVVFTA LVGLLVAPVS LHPMVGFCAI LFIAVGAGAS GALNMWWDAD IDVIMKRTAG RPVPAGKVQP GEALALGLGL SGLSVVMLAL ATNLLAAGLL AFTIFFYAVV YSMWLKRSTP QNIVIGGAAG AFPPMIGWVA ATGSVSLEAV LMFALIFMWT PPHFWALALF MKSDYHDAGV PMLTVTHGRK STRTHILVYT VLLVPVALGL ALTPVAGPLY LATALVLNAI FLKGAWDIWR RDEAQAEADK YATEKRFFKF SLLYLALHFT ALLAEAILTR SGLWTFGG
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