| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1031 |
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| Symbol | trpB |
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| ID | 5710999 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1064459 |
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| End bp | 1065691 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641266942 |
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| Product | tryptophan synthase subunit beta |
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| Protein accession | YP_001532374 |
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| Protein GI | 159043580 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0133] Tryptophan synthase beta chain |
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| TIGRFAM ID | [TIGR00263] tryptophan synthase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.466116 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.300404 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGACG ACCTGATCAA TTCCTTCATG ACCGGCCCGG ACGAGAATGG CCGGTTCGGC
GATTTCGGGG GCCGGTTCGT CTCCGAGACC CTGATGCCGC TCATCCTGGA GCTCGAACGC
CAATACGAGT TCGCCAAGAC CGACCAGGCC TTCTGGGACG AGATGCACCA TCTCTGGACC
CATTACGTGG GCCGGCCCAG CCCGCTCTAT TTCGCCGAAC GCCTGACCGA GCGGCTGGGC
GGCGCGAAGG TCTACCTCAA GCGGGACGAG CTGAACCACA CCGGCGCGCA CAAGATCAAC
AACGTGTTGG GCCAGATCAT CCTCGCCCGC CGCATGGGCA AGACCCGCAT CATCGCCGAG
ACCGGCGCGG GCCAGCACGG CGTTGCCACG GCCACGGTCT GCGCCAAGTT CGGCCTGAAA
TGCGTGGTCT ACATGGGCGC CCATGATGTC GAACGCCAGG CGCCCAACGT CTTCCGCATG
AAGCTGCTGG GCGCCGAGGT CGTGCCCGTC ACCTCCGGTC GCGGCACGCT CAAGGACGCC
ATGAACGACG CGTTGCGCGA CTGGGTCACC AATGTGCGCG AGACCTTCTA CTGCATCGGC
ACGGTCGCGG GCCCGCACCC GTACCCGGCC ATGGTCCGCG ATTTCCAGGC GATCATCGGC
CAGGAGGCCC GCGAGCAGAT GATGGAGGCC GAGGGCCGGC TGCCCGATAC GCTGATCGCC
GCGATCGGCG GGGGCTCCAA CGCCATGGGC CTGTTCTACC CGTTCCTCGA TGACAAGGAG
GTCGCGATCA TCGGGGTGGA GGCCGGCGGC AAGGGCGTCA ACGAGAAGAT GGAGCATTGC
GCATCCCTGA CCGGTGGCCG CCCGGGCGTG CTCCATGGCA ACCGCACCTA CCTGCTGCAG
GACGATGACG GCCAGATCCT CGAAGGCTTC TCGATCTCCG CCGGGCTGGA CTATCCCGGC
ATCGGACCGG AGCATGCCTG GCTGCACGAT ATCGGACGGG CGAAATATGT CTCGATCACC
GATGCCGAGG CGCTCGACGC CTTCCAGCTC TGCTGCGAGA CCGAGGGCAT CATCCCCGCG
CTGGAGCCGT CGCACGCGCT GGCCCATGTG GCCAAGATCG CGCCGGACCT GCCCCGCGAC
CACATCATCT GCATGAACAT GTGCGGACGC GGCGACAAGG ACATCTTCAC CGTCGCCAAG
GCGCTGGGTC AGGACATGTC CGGCGCGGTC TGA
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| Protein sequence | MPDDLINSFM TGPDENGRFG DFGGRFVSET LMPLILELER QYEFAKTDQA FWDEMHHLWT
HYVGRPSPLY FAERLTERLG GAKVYLKRDE LNHTGAHKIN NVLGQIILAR RMGKTRIIAE
TGAGQHGVAT ATVCAKFGLK CVVYMGAHDV ERQAPNVFRM KLLGAEVVPV TSGRGTLKDA
MNDALRDWVT NVRETFYCIG TVAGPHPYPA MVRDFQAIIG QEAREQMMEA EGRLPDTLIA
AIGGGSNAMG LFYPFLDDKE VAIIGVEAGG KGVNEKMEHC ASLTGGRPGV LHGNRTYLLQ
DDDGQILEGF SISAGLDYPG IGPEHAWLHD IGRAKYVSIT DAEALDAFQL CCETEGIIPA
LEPSHALAHV AKIAPDLPRD HIICMNMCGR GDKDIFTVAK ALGQDMSGAV
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