Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1021 |
Symbol | trmB |
ID | 5710537 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 1056510 |
End bp | 1057241 |
Gene Length | 732 bp |
Protein Length | 243 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641266932 |
Product | tRNA (guanine-N(7)-)-methyltransferase |
Protein accession | YP_001532364 |
Protein GI | 159043570 |
COG category | [R] General function prediction only |
COG ID | [COG0220] Predicted S-adenosylmethionine-dependent methyltransferase |
TIGRFAM ID | [TIGR00091] tRNA (guanine-N(7)-)-methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.13718 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.410513 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGATG ATGCGTCCCA CCCCCCCAAG ACCGCCCCCT CCGGCGCGCC CTGGCGCAAT TTCTATGGCC GCCGCAAGGG CAAGGGCCTG CGCCCGTCCC AGGAGGCCTA CCTGGAGGAG GACCTTGCCG CGCTCTCCCC GGGTCCTGTG TCCTGGGAGG CGAACCCGGA GCGTCGCCCG CTCGATCTGG CCAGCCGGTT CGGGGATCGC GAGATCTGGC TCGAGATCGG CTTCGGCGGG GGCGAGCACA TGGTGCACCA GGCCGCGACC TATCCGGAGA TCGGGATCAT CGGGGCCGAA CCCTATATCA ACGGGGTCGC GATGCTTCTG GGCAAGATCC GGGCGGCGGG GGTCGAGAAC CTCGCCGTGC ATCCGGGCGA TGCGCGGGAT CTCTTCGATG TGCTGGCCCC GGGCAGTGTC GCCAAGGCCT TCCTGCTCTA TCCCGATCCC TGGCCGAAGA AACGCCACCA TCGCCGCCGC TTCGTCACCC CCGAGCATCT GGAGCCCCTG GCGCGGGTGC TGCGGCCGGG CGCGGAGTTT CGCATCGCCA CGGACATTCC CGACTATGTC CGGCAGGCCC TGGAGGAAGT GCCGCGCGCG GGCTTCGACT GGCTGGCCGA GGGGCCGGAG GATTGGCGGC GGCCCTGGGG CGACTGGATC TCCACCCGCT ACGAGCAGAA GGCGCTGCGC GAGGGGCGCA CGCCCCATTA CCTGACCTTT CGCCGCCGCT GA
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Protein sequence | MSDDASHPPK TAPSGAPWRN FYGRRKGKGL RPSQEAYLEE DLAALSPGPV SWEANPERRP LDLASRFGDR EIWLEIGFGG GEHMVHQAAT YPEIGIIGAE PYINGVAMLL GKIRAAGVEN LAVHPGDARD LFDVLAPGSV AKAFLLYPDP WPKKRHHRRR FVTPEHLEPL ARVLRPGAEF RIATDIPDYV RQALEEVPRA GFDWLAEGPE DWRRPWGDWI STRYEQKALR EGRTPHYLTF RRR
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