Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0845 |
Symbol | |
ID | 5711471 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 854790 |
End bp | 856109 |
Gene Length | 1320 bp |
Protein Length | 439 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641266754 |
Product | MATE efflux family protein |
Protein accession | YP_001532191 |
Protein GI | 159043397 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.457545 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.657757 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCTGACA CCGCGGCGCG GGCGCCCATC ACCCATCGCC GGGTGCTGCA TATCGCGGTG CCCATCGTGC TGTCGAATGC CACCGTGCCG ATCCTGGGCG CGGTGGACAC GGGCGTCGTG GGCCAGATGG GCGAGGCTGC GCCCATCGGT GCGGTGGGCA TCGGCGCGAT CATCCTGACG GCGATCTACT GGATCTTCGG TTTCTTGCGG ATGGGCACCA GCGGGCTGGT GGCGCAAGCG CTGGGGGCAG AGGACCGCGA CGAGGTTTCG GCCCTGCTGA CCCGTGCGCT GATGATCGGG TTCGGGGCCG GGCTGGCGCT GATCGCGCTG CAATCGGCGC TGTTCTGGGG CGCCTTCCAG TTGTCGCCCG CCAGTGCGGA GGTCGAGACG CTGGCGCGGG AGTACATGGC GATCCGGATC TGGTCGGCGC CTGCGGCCAT CGCGATCTAC GGGCTGACCG GCTGGCTGAT CGCGGCGGAG CGGACGCGCG GGGTGCTGGT GCTGCAACTG TGGATGAACG GGCTGAATAT CGGGCTCGAT CTGTGGTTCG TGCTGGGGCT CGGCTGGGGT GTGCCGGGGG TGGCCTTCGC CACCTTCCTC GCGGAATGGA CGGCGCTTGG CTTGGGTCTG TGGCTCTGCC GGGATGCGTT CGGGCGGCCT GCATGGCGGG ATCGGGCGCT GGTGTTCGCG CGGGCGCGGC TGCTGCGGAT GGCATCGGTG AACAGCGACA TCCTGATCCG GTCGGTGCTG CTGCAGGCGG CCTTCGTCTC GTTCCTGTTT CTGGGCGCGG ATCTGGGCGA TGTGACCCTG GCGGCCAACC AGGTGCTTTT GCAGTTTCTG CATGTCACCG CCTATGCGCT CGATGGGTTC GCCTTTGCCG CCGAGGCGCT GGTGGGCCAG GCGTTCGGCG CGGGCGCGGT GGACCGGCTG CGGCGCGGCG CGCTGCTGAC GAGCGTCTGG GGCGGGATCA CCTGCGTCGC ACTGGCGCTG GGCTTCGCGC TGGCGGGGCC CTGGGTGATC GACCTGATGA CCACGGCCGA GGAGGTGCGG GCGGTGGCGC GCAGCTACTT GCCATGGATG GTGGCCGCGC CGCTGTTGGG CGTCGCGGCC TGGATGCTGG ACGGGATTTT CATCGGGGCG ACGCGCACGA AGGACATGCG CAACATGATG GTGCTGTCCT TCGCGGCCTA TGCGGCGGCG GTGGCGGTGC TGCTGCCGCT CTTCGGCAAT CACGGGCTCT GGGCGGCGCT GATGGTGATG TTCGTGGTGC GCGCCGTGAC GCTGGCGCTC CGCTATCCGG CTCTGGAGCG CGCGCTGTAG
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Protein sequence | MADTAARAPI THRRVLHIAV PIVLSNATVP ILGAVDTGVV GQMGEAAPIG AVGIGAIILT AIYWIFGFLR MGTSGLVAQA LGAEDRDEVS ALLTRALMIG FGAGLALIAL QSALFWGAFQ LSPASAEVET LAREYMAIRI WSAPAAIAIY GLTGWLIAAE RTRGVLVLQL WMNGLNIGLD LWFVLGLGWG VPGVAFATFL AEWTALGLGL WLCRDAFGRP AWRDRALVFA RARLLRMASV NSDILIRSVL LQAAFVSFLF LGADLGDVTL AANQVLLQFL HVTAYALDGF AFAAEALVGQ AFGAGAVDRL RRGALLTSVW GGITCVALAL GFALAGPWVI DLMTTAEEVR AVARSYLPWM VAAPLLGVAA WMLDGIFIGA TRTKDMRNMM VLSFAAYAAA VAVLLPLFGN HGLWAALMVM FVVRAVTLAL RYPALERAL
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