| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0747 |
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| Symbol | lolC |
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| ID | 5711182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 755116 |
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| End bp | 756402 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641266655 |
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| Product | lipoprotein releasing system |
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| Protein accession | YP_001532093 |
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| Protein GI | 159043299 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTCCGTT CCCCGCCGCC CTTCGCCCGC TTCGAATGGC TGATCGCCTG GCGCTACCTG
CGCGCGCGCC GCTCCGAAGG GGGCGTCAGC GTGATGACCT GGATCAGCCT GGTGGGCATC
ACGCTCGCGG TCTTCGCCCT GATCGCGACG CTTGCCGTGC GCAGCGGGTT CCGGGCGGAG
TTCGTCGACA CGATCCTCGG CGCCAACGCC CATGTCACGG TTTACGGCGC GATCTATGAC
GCCGAGACCG GGGCGACCTC CCGTCTGCTG ACCGAGTACG CGGCGCGGAC CGAGGCGCTG
GCGGCAGTGC CCGGCGTGAC CCGGGCCGCG CCGCTGATCC GGGGGCAGGT CATCACCACC
CACGAGGGCC GCACCTCCGG GGTGGAGGTG TTCGGGCTGT CCGAGGGCGA CCTGCGTTCC
CTGCCCGGGA TCGCGGCGGA TGAGACCGCG CGGGGCGACC TCGACCGGTT CTCCGACGGG
ATCGCCATCG GCTCCGGCGT GGCGCGGGAG CTGGGCGCGG GAGTAGGCGA CATGATCCGC
CTGATCTCGC CCGACGGGGT GAAGACACCC TTCGGCACCA GCCCGCGGGT CAAGGCCTAT
GAGGTGGTCT ACGTGTTTTC GCTCGGCCGG TTCGACATCG ACCGGACCCG GGTCTACATG
CCCTTCGCCG AAGCTCAGGC GTTTTTCAAC CGCGAGGGCG GGGCGGACGA GATCGAGGTG
ATGGTGGCCG ATCCCGAAAA CCTCGACCGC TATACGCTGG GGCTGATGCA GGCGGCGGGG
CAGGGGGCGC TCCTGTGGAC CTGGCAGGAC GCGTCGGGCG GGTTCCTGCG GGCGCTGGAA
ATCGAGGACA ACGTGATGTT CATCATCATG TCGATCCTCG TGCTGATCGC GGCAATGAAC
ATCATTTCGG GCCTCGTGAT GCTGGTGAAG AACAAGGGCC GCGATATCGG GATCCTGCGC
ACCATGGGGC TGAGCGAGGG CGCGGTGCTG CGGGTGTTTT TCCTGTGTGG CGCGGCCACG
GGGGTGATCG GAACCGCGCT TGGCGTGGTG CTCGGCTGCC TCTTCGCGAT CTATATCGAC
CAGGTTTTTT CCTTTGTGAA CTGGGCCTTG GGGGGTGGTG TCTGGGATCC GAGCATCCGG
GGGATCTACA ATGTGCCGGC CAAGCTGGAG TTTGGGGATG TCGCCTCGGC GGTGGCGCTG
TCGCTGGGGC TGTCGTTCGT GGTGACGCTC TTTCCGGCGC GGCGGGCGGC GCGGATGAAC
CCGGTGGAGG CGCTGCGCTA TGAGTGA
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| Protein sequence | MVRSPPPFAR FEWLIAWRYL RARRSEGGVS VMTWISLVGI TLAVFALIAT LAVRSGFRAE
FVDTILGANA HVTVYGAIYD AETGATSRLL TEYAARTEAL AAVPGVTRAA PLIRGQVITT
HEGRTSGVEV FGLSEGDLRS LPGIAADETA RGDLDRFSDG IAIGSGVARE LGAGVGDMIR
LISPDGVKTP FGTSPRVKAY EVVYVFSLGR FDIDRTRVYM PFAEAQAFFN REGGADEIEV
MVADPENLDR YTLGLMQAAG QGALLWTWQD ASGGFLRALE IEDNVMFIIM SILVLIAAMN
IISGLVMLVK NKGRDIGILR TMGLSEGAVL RVFFLCGAAT GVIGTALGVV LGCLFAIYID
QVFSFVNWAL GGGVWDPSIR GIYNVPAKLE FGDVASAVAL SLGLSFVVTL FPARRAARMN
PVEALRYE
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