| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0716 |
|---|
| Symbol | |
|---|
| ID | 5711151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 723225 |
|---|
| End bp | 724619 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641266624 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | YP_001532062 |
|---|
| Protein GI | 159043268 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3800] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.582865 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACCC AGAAACTCTA TGCCGGCGCG AAGCTGCGCG AGACCCGCAC CGGGCTCGGC
CTGACCCAGA AGCTCTTTGC CGAGAAACTG GGCGTGTCCC TGCCCTATCT GAACCAGATG
GAGAACAACA ATCGCCCGGT CTCCAGCACC GTGCTGCTGG CGCTGGCGCA GGAGTTCGGC
TTCGACGTCA CCCAGCTCAG CACCGGGGAG GCGGAGCGGC TGGTGTCGGA CATGCGCGAG
GCGCTGGCCG ATCCGGTCTT CGGGGAAACG CCGCCACCGC TCGCCGATCT GCGGCTCGCG
GCGTCCAACG CCCCGGCCCT GGCGCGCGCC TTTCTCGAAC TGCATCGCCA CTACCGCCAG
ACCCATGAAC GGCTGGCATC GCTCGATGAG GCGCTGGGGC GCGAAGGCTC CAGCCTGCAA
CCCTCGCCCT GGGAAGAAGT GCGCGACTTC TTCCACTATT GCGACAATTA CATCGACGCC
GTGGACCACG CCGCCGAGCA TATCGCCAAC CAGATCGACG GAGAGTTGGA ATCCGGCGCC
CGGCGCCTGC TGTCGCGCAA GGGGCTGGCC GTGCAATACA GCGATAGCGC CGATCTGCGC
CATTTCAACC CGCAATCGGG GGTGCTGACC CTGTCCACCC GGGCGGCCGC GCCCACCCGC
CGGTTCCAGC TGCTGGTGCA ACTGGGGCTG GTGACCCAGA ACGACCTGCT GGAGGCGACG
CTGGATCTCG CACGGTTCCA GACCGACGAG GCCCGCGCCA TCGCCAAGCT GGGCCTGGCC
AATTACTTCG CCGGTGCGGT GCTGCTGCCC TATCGCGCAT TCCAGGCGGC GGCGGCCGAA
ACCCGCCACG ACCTGGAACG GCTCGCGGAC CGGTTCGGCG CCTCGATCGA ACAGGTGGCG
CATCGCCTTT CGACCCTGCA ACGCCCGGGT GCCAAGGGCA TCCCCTTCTT CTTCGTGCGG
GTGGATCAGG CGGGCACGAT CACCAAGCGG CACTCGGCCA CCCGGCTGCA ATTCGCCCGC
TATGGCGGGG CCTGCCCGCT GTGGAACGTG CACCAGGCGT TCGAGACACC GGGCCGGTTC
CTGCGCCAGC TGGCCGAGAC CCCGGACGGG GTCCGCTACC TGTGCCTGGC GCGCGATGTG
TCGAAATCCG GCGGCAGCTG GGGCGCGCCC ACCCGCCGCT ATGCCATCGG CCTCGGCTGC
GAGGTGCGCC ATGCCCCGGC GCTGGTCTAT GGCGACGGAC TCGACCTCAG CCAAGGGTTC
GAGCCCATCG GCATTTCCTG CCGCATCTGC GAGCGCAGCG CCTGCCACCA GCGCTCCGTC
CCGCCGCTGG AGCGCAAGCT CAGCGTCGAT CCGGGGCTGC GCGGTGTGCT GCCCTACGAG
GTGGATACCG GCTGA
|
|---|
| Protein sequence | MATQKLYAGA KLRETRTGLG LTQKLFAEKL GVSLPYLNQM ENNNRPVSST VLLALAQEFG
FDVTQLSTGE AERLVSDMRE ALADPVFGET PPPLADLRLA ASNAPALARA FLELHRHYRQ
THERLASLDE ALGREGSSLQ PSPWEEVRDF FHYCDNYIDA VDHAAEHIAN QIDGELESGA
RRLLSRKGLA VQYSDSADLR HFNPQSGVLT LSTRAAAPTR RFQLLVQLGL VTQNDLLEAT
LDLARFQTDE ARAIAKLGLA NYFAGAVLLP YRAFQAAAAE TRHDLERLAD RFGASIEQVA
HRLSTLQRPG AKGIPFFFVR VDQAGTITKR HSATRLQFAR YGGACPLWNV HQAFETPGRF
LRQLAETPDG VRYLCLARDV SKSGGSWGAP TRRYAIGLGC EVRHAPALVY GDGLDLSQGF
EPIGISCRIC ERSACHQRSV PPLERKLSVD PGLRGVLPYE VDTG
|
|---|
| |