Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0451 |
Symbol | pqqB |
ID | 5711367 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 438663 |
End bp | 439556 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641266355 |
Product | pyrroloquinoline quinone biosynthesis protein PqqB |
Protein accession | YP_001531800 |
Protein GI | 159043006 |
COG category | [R] General function prediction only |
COG ID | [COG1235] Metal-dependent hydrolases of the beta-lactamase superfamily I |
TIGRFAM ID | [TIGR02108] coenzyme PQQ biosynthesis protein B |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCATTCC GCGCGCATAT TCTGGGGGCT GCTGCCGGAG GCGGGTTGCC CCAGTGGAAT TGTGGTTGTG ACAACTGCAA CCTCGCAAGA TCCGGCACCA TCCCCCCACA GACCCAGTCC TCCCTGGCCG TCACTGCAGA CGGCACGTCC TGGGCGATTC TCAACGCATC GCCCGACATT CGCGGACAAC TTGCCGACAC ACCGGCCCTG CACCCGACGG GCTTGCGCGA TCTTCCGCTG CGCGCGGTGC TGGTCACGAA TGGCGATATC GACCACGTGG CGGGCCTGCT GACCTTGCGC GAAATGCAGC CATTCCGTCT CTTTGCAACG GCAGGTATCC ACGAGGTGCT GGCCGAAAAC CCGATCTTCA ATGCGGTAAA CGCGACGGTC GTGCCGCGCG AGACCATCGC GCTCGATGCG CCATTCGAGC TGGTGCCGGG TCTCATCGCC ACCCTGTTTC CCGTGCCCGG CAAGGTGCCG CTTTACCTCG AGGGAGAGAC AGTGGAGACT GACTTGATCG GCGATCAGAC CGTGGGCGTG CGTCTTCAGG CCCTCGACTC CACGGCCTAC TACATCCCGG GCTGCGCGTT GCTGACCGAC GACCTTCGCG CCCGGCTGGA CGGGGCCGAC ACGCTCTTTT TCGACGGCAC ACTCTGGGCG GATGATGAAA TGGTACGGGC GGGTCTCGGC AAAAAGACCG GCAAGCGCAT GGGCCATATG TCCATGAGCG GCCCAGACGG GTCCATCGCC GCGTTCGAGG GCCTGTCCAT CCGGCAGAAG ATCTACGTCC ACATGAATAA CACGAACCCG GTGCTCCGCC CCAGCTCGGC CGAGAAGGCG CAAGCAGAGG CCGCGGGCTG GATCATCGGG CAAGATGGTA TGGAGGTGTC CTGA
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Protein sequence | MAFRAHILGA AAGGGLPQWN CGCDNCNLAR SGTIPPQTQS SLAVTADGTS WAILNASPDI RGQLADTPAL HPTGLRDLPL RAVLVTNGDI DHVAGLLTLR EMQPFRLFAT AGIHEVLAEN PIFNAVNATV VPRETIALDA PFELVPGLIA TLFPVPGKVP LYLEGETVET DLIGDQTVGV RLQALDSTAY YIPGCALLTD DLRARLDGAD TLFFDGTLWA DDEMVRAGLG KKTGKRMGHM SMSGPDGSIA AFEGLSIRQK IYVHMNNTNP VLRPSSAEKA QAEAAGWIIG QDGMEVS
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