| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0194 |
|---|
| Symbol | relA |
|---|
| ID | 5712119 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 193417 |
|---|
| End bp | 195561 |
|---|
| Gene Length | 2145 bp |
|---|
| Protein Length | 714 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641266089 |
|---|
| Product | GTP pyrophosphokinase |
|---|
| Protein accession | YP_001531544 |
|---|
| Protein GI | 159042750 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGCGGG ATTCGTCGGA CAGCCTGATC GAAGCCCGCG ACCTGATCGC GCTTGTCCAG
ACCTACAACC CCCGGACGAA CGCGGCCCTG ATCGAAGCGG CCTATGACTA CGGTCGCGAG
ATGCACCGGG GTCAGTTGCG CCATTCCGGG GAGGAGTATT TCACCCACCC CGTCGCGGTG
GCCGCCATTC TTGCCGAGCA GCGGCTGGAT GACAGCACCA TCATTACCGC CCTGCTGCAT
GACACCGTCG AAGACACGCG GTCGACCTTT GCCGAGCTGG AATCGCAGTT CGGGCGCGAG
ATCGCCGAGC TGGTCAACGG GGTCACCAAC CTGACCAACC TGCAGCTGTC GAGCCGCGAG
ACCAAGCAGG CGGAGAATTT CCGCAAGCTC TTCATGGCGA TGTCCAAGGA CCTGCGGGTG
ATCCTGGTGA AGCTGGCCGA CCGGCTCCAC AACATGCGCA CGATCAAGCA CATGCCGGTG
GAAAAACAGG TCAAGAAGGC CCGCGAGACC ATGGACATCT ATGCGCCGCT GGCCGGGCGG
ATGGGCATGC AGTGGATGCG CGACGAACTG GAGGACCTGT CGTTCCGGGT GCTGAACCCG
GACGGGCGGC AGTCCATCAT GCGCCGGTTC ATCAAGCTGC AGAACGAGAC CGGCGACGTG
GTCCAGAAGA TCACCAGCGA CATCCGCAAG GAGCTGGACG CCCACGGGAT CGAGGCCGAT
GTCTATGGCC GGGCGAAGAA ACCCTATTCG ATCTGGCGCA AGATGGAGGC CAAGCAGCTC
GGCTTCTCGC GATTGTCGGA TATCTACGGG TTCCGGGTCA TCACCCACAG CGAAGATGAC
TGCTACGGGG TGCTGGGCGC GATCCATCAG CGTTGGCGCG CGGTGCCGGG GCGGTTCAAG
GATTATATCA GTCAGCCGAA ATCGAACGGG TATCGGTCGA TCCACACCAC GGTGTCGGGC
CGTGACGGCA AGCGGGTGGA GGTGCAGATC CGCACCCGCC AGATGCACGA GGTGGCCGAG
GCCGGCGTGG CCGCGCACTG GTCCTACCGG GACGGGGTGC AGGTGGAAAA CCCCTTCGCC
GTCGACCCGG CGGAGTGGAT CGCCAGCCTG AGCGAGCGGT TCGAAAGCTC CGAGGATCAC
GGCGAGTTTC TCGAACACGT CAAGCTGGAG ATGTATTCCG ACCAGGTGTT CTGCTTCACC
CCCAAGGGAG AGGTGGTCAA GCTGCCCAAG GGCGCGACGC CACTGGATTA TGCCTACGGC
ATTCACACCC GGATCGGGGA CAGTTGCGTG GGGGCCAAGG TGGACGGGAT TCGCGTGCCG
CTTTGGACCC GGCTGAAGAA TGGCCAGTCG GTCGAGATCA TCACCGCCGA CGGCCAGCGC
CCCCAGGCGA CCTGGATCGA TATCGTGGTC ACTGGCCGCG CCAAGCAGGC GATCCGCCGG
TCCCTGCGCG AGGAGGACCG GGCCCGTTTC GTCAAGCTGG GCCAGGAGCT CGCCCGGGTG
GCGTTCGACC ATGTGGGCAA GCGCGTGACC GACAAGGCGC TGAAGACCGC CGCGCATCAG
CTGGGCTATG GCGGGCGGCT GGAGCTGCTC TCGGCCCTGG GCAGCGCGGA TATCTCGGCC
CGGGACGTGG TCGAGGTGCT CTATCCCGAG TTGCAGGGGC AGGGCGGCGA CGAGGTCGCG
GCGGATCGCG CGGTGGTCGG CCTTCATTCC GACCAGAGCT TCGAGCGTGC GCGCTGCTGC
CAGCCGGTGC CCGGGGAGCG GATCGTCGGC ATCGCCTATC GCGGCCACGG GGTGCGCGTG
CACGCCATCG ACTGCCCGGC GCTGGAGGAG TTCGAGGACG AGATGCGGCG CTGGATCGAC
CTGCAATGGC ATTCAGGACG CCATGCCGCG GTCCACGCGG TTCGGCTGGA TGTCACGATC
GGCAACGATC AGGGCGTTCT GGGACGAATC TGCACATTGA TCGGCGAGCA GCGGGCGAAT
ATTTCCGACT TGCATTTTGT TGACCGGAAA CCGGACTTTT ACCGCCTACT TCTAGAAGTA
GAAGTGCGGG ACCTGGAGCA CTTGCACCGA GTAATGACCG CCGTGCAGGC CGACACCGAT
GTGGCGGGCC TGGAACGACA CCGTGACCTG AGCCGCAAGC CCTGA
|
|---|
| Protein sequence | MPRDSSDSLI EARDLIALVQ TYNPRTNAAL IEAAYDYGRE MHRGQLRHSG EEYFTHPVAV
AAILAEQRLD DSTIITALLH DTVEDTRSTF AELESQFGRE IAELVNGVTN LTNLQLSSRE
TKQAENFRKL FMAMSKDLRV ILVKLADRLH NMRTIKHMPV EKQVKKARET MDIYAPLAGR
MGMQWMRDEL EDLSFRVLNP DGRQSIMRRF IKLQNETGDV VQKITSDIRK ELDAHGIEAD
VYGRAKKPYS IWRKMEAKQL GFSRLSDIYG FRVITHSEDD CYGVLGAIHQ RWRAVPGRFK
DYISQPKSNG YRSIHTTVSG RDGKRVEVQI RTRQMHEVAE AGVAAHWSYR DGVQVENPFA
VDPAEWIASL SERFESSEDH GEFLEHVKLE MYSDQVFCFT PKGEVVKLPK GATPLDYAYG
IHTRIGDSCV GAKVDGIRVP LWTRLKNGQS VEIITADGQR PQATWIDIVV TGRAKQAIRR
SLREEDRARF VKLGQELARV AFDHVGKRVT DKALKTAAHQ LGYGGRLELL SALGSADISA
RDVVEVLYPE LQGQGGDEVA ADRAVVGLHS DQSFERARCC QPVPGERIVG IAYRGHGVRV
HAIDCPALEE FEDEMRRWID LQWHSGRHAA VHAVRLDVTI GNDQGVLGRI CTLIGEQRAN
ISDLHFVDRK PDFYRLLLEV EVRDLEHLHR VMTAVQADTD VAGLERHRDL SRKP
|
|---|
| |